Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1834 bp · TkA05G458710|TK1151|cDNA
CATAGAAAAAGTTCTTTTCTTCAAAAGTAACCTTTTTGTGAAGAAAAAAAAAGTTACTTGAGGGACCAAATTGCACATAAGGAAAGTTTTAAACCCCAAAAGCATATTCAATACCCTGGCGCCATTTGGGCCCTCAATTTCCTACCACCGTCAACCCCCATCATCTACACGATCCCATCAACTCCGGTTCTCTCTCCCTCCATATTTAGATCTCGTCGGTTCCTCCATTTCTATATATCCAACCGCAATCTCGCATCATC...
1356 bp · TkA05G458710|TK1151|CDS
ATGAGAGAAATCTTGCACATCCAAGGAGGCCAATGCGGCAATCAAATCGGTACCAAATTCTGGGAAGTTATTTGTGATGAACACGGCATTGATCATACCGGAAGTTACAGTGGAACCACTCCTGATCTGCAACTTGAACGTATCAACGTTTACTTCAATGAGGCTTCCGGTGGCCGGTATGTTCCTCGTGCTGTGCTTATGGATCTCGAGCCTGGGACCATGGAGAGTATTAGATCTGGTTCCAATGGGAAGATCTTCCG...
Protein
Download Protein FASTA451 aa · TkA05G458710|TK1151|PROTEIN
MREILHIQGGQCGNQIGTKFWEVICDEHGIDHTGSYSGTTPDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMESIRSGSNGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDSLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLIENADECMVLDNEALYDICFRTLKLSNPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G458710 |
|---|---|
| TK1151 ID | TkA05G458710 |
| OH-1004 ID | LXL04_035712 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 93.800 |
| Protein coverage (%) | TK1151 96.674 / OH-1004 97.539Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G458710 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:114954259-114956315 (+) | |||||||||
| Description | Similar to TUBB1: Tubulin beta-1 chain | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. Rice
| |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000226 microtubule cytoskeleton organization Biological Process GO:0000278 mitotic cell cycle Biological Process GO:0007017 microtubule-based process Biological Process GO:0009416 response to light stimulus Biological Process GO:0009826 unidimensional cell growth Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005773 vacuole Cellular Component GO:0005829 cytosol Cellular Component GO:0005874 microtubule Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G20010 ath:AT1G75780 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF10644Misat_Tub_SegII2-78 aaPF00091Tubulin3-212 aaPF14881Tubulin_3121-173 aaPF13809Tubulin_2133-177 aaPF03953Tubulin_C262-383 aaPF13809Tubulin_2307-355 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G458710 | PF10644 | Misat_Tub_SegII | 2 | 78 | 0.00059 | 20.8 |
| TkA05G458710 | PF00091 | Tubulin | 3 | 212 | 2e-65 | 221.3 |
| TkA05G458710 | PF14881 | Tubulin_3 | 121 | 173 | 0.0016 | 18.9 |
| TkA05G458710 | PF13809 | Tubulin_2 | 133 | 177 | 0.0017 | 18.3 |
| TkA05G458710 | PF03953 | Tubulin_C | 262 | 383 | 2.3e-40 | 138.4 |
| TkA05G458710 | PF13809 | Tubulin_2 | 307 | 355 | 0.0017 | 18.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.