RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G456880
Reference: TK1151 Chr: Chr05 Coordinates: 114457068-114458804 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

967 bp · TkA05G456880|TK1151|cDNA

GTTTCGTGCTTTCTTCTCTCTGCCTTCCAAGACAAATCCCTTTCTTATTCTATATAAAACACAAAAATTTTATTTCAACAAATCATTTTACAATCGATCATAACACGTGCTTGCCCTCCATCGAATTCCACCATGGTTTCTTCGTTTCTAAGAACTCCGTTTCATTATGGTGAGAAGATGAGAGAGGTTTGCACCACCATGTTTTCGCTGGTTTTCTTCCAAGTCCTCCTTCTCATATTCGGCTTCCAATTTGGTGTATT...

CDS

Download CDS FASTA

612 bp · TkA05G456880|TK1151|CDS

ATGGTTTCTTCGTTTCTAAGAACTCCGTTTCATTATGGTGAGAAGATGAGAGAGGTTTGCACCACCATGTTTTCGCTGGTTTTCTTCCAAGTCCTCCTTCTCATATTCGGCTTCCAATTTGGTGTATTTGGGGGTACAATCGGAGCTTTAGGAGGAGCATTGATCGGATTTAAGAACAAAAAGAACTTCTTCCAAGATGTGATCGTGGGGGCAGCATCTGGGGCAGTTTTATCACAGAAAATTACTACGGCTACCTTTGA...

Protein

Download Protein FASTA

203 aa · TkA05G456880|TK1151|PROTEIN

MVSSFLRTPFHYGEKMREVCTTMFSLVFFQVLLLIFGFQFGVFGGTIGALGGALIGFKNKKNFFQDVIVGAASGAVLSQKITTATFEQFLYSDHDDEHGCFLHLVDIVASALEPKLLRDENHIFLITKVASCEKLIKLPKIAIIKDHVFDASGNATCCSICLQDFEVEDAAAMFPKCEHKFHPECISQWLLAHNSCPVCRRSI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G456880
TK1151 IDTkA05G456880
OH-1004 IDLXL04_022296
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G456880
LocationChr05:114457068-114458804 (-)
DescriptionSimilar to NIP2: NEP1-interacting protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g66070 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0667700 Probable E3 ubiquitin-protein ligase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022296 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0034137 positive regulation of toll-like receptor 2 signaling pathway Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
GO:0045087 innate immune response Biological Process
GO:0046330 positive regulation of JNK cascade Biological Process
GO:0141163 positive regulation of cAMP/PKA signal transduction Biological Process
GO:1900745 positive regulation of p38MAPK cascade Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT2G17730
ath:AT4G35840
ath:AT5G66070
mmu:224938
rno:192256
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.338
Rank 1 · TkA05G456880 · TK1151
Cytoplasm0.258
Rank 2 · TkA05G456880 · TK1151
Nucleus0.203
Rank 3 · TkA05G456880 · TK1151
Golgi apparatus0.140
Rank 4 · TkA05G456880 · TK1151
Cell membrane0.133
Rank 5 · TkA05G456880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23413zf_RING_Vps8_fungal23-30 aa
PF13441Gly-zipper_YMGG43-77 aa
PF13488Gly-zipper_Omp43-56 aa
PF05433Rick_17kDa_Anti44-56 aa
PF13488Gly-zipper_Omp68-81 aa
PF05433Rick_17kDa_Anti68-80 aa
PF17123zf-RING_11128-139 aa
PF14835zf-RING_6132-164 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G456880PF23413zf_RING_Vps8_fungal23300.6910.0
TkA05G456880PF13441Gly-zipper_YMGG43770.001319.4
TkA05G456880PF13488Gly-zipper_Omp43560.06213.9
TkA05G456880PF05433Rick_17kDa_Anti44560.1512.7
TkA05G456880PF13488Gly-zipper_Omp68810.06213.9
TkA05G456880PF05433Rick_17kDa_Anti68800.1512.7
TkA05G456880PF17123zf-RING_111281393.7e-0833.6
TkA05G456880PF14835zf-RING_61321641.39.7
TkA05G456880PF14447Prok-RING_41471643.28.4
TkA05G456880PF04423Rad50_zn_hook1541691.69.3
TkA05G456880PF25143Zn_ribbon_IFT122_C1561690.0005920.4
TkA05G456880PF13920zf-C3HC4_31562030.002818.1
TkA05G456880PF13639zf-RING_21572001.2e-1248.6
TkA05G456880PF12678zf-rbx11572001.7e-0732.1
TkA05G456880PF12861zf-ANAPC111572020.0001222.8
TkA05G456880PF17120zf-RING_161571980.2211.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKX5Arabidopsis thalianasp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 133.500%Swiss-ProtMedium
Q5QLR5Oryza sativa subsp. japonicasp|Q5QLR5|ZFP1_ORYSJ Probable E3 ubiquitin-protein ligase ZFP128.600%Swiss-ProtLow

JBrowse

View in Genome Browser