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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G451940
Reference: TK1151 Chr: Chr05 Coordinates: 113109498-113112712 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2352 bp · TkA05G451940|TK1151|cDNA

CAACGGATAAACTGCCACCATGCCCCAGCCACGGGTTTTGCAGCAGAGAGTGCAAATAATGAATGCTCTGCTTCTCCCTCCACCGTCCGCCACCACCGCTCGCTTCCTCCGCCACCGCAATTTCTGTCAACAATCACTCTCCACCACCTCTTATAAGCACTTGCCTCTCCGTTCATCCGTCACCTCACTCTCCTTATCGGAAGACGATGTAATTACAGATAATGACGACGTTTCACCTTTCTCCCACCGCCGGTACGACT...

CDS

Download CDS FASTA

2085 bp · TkA05G451940|TK1151|CDS

ATGCCCCAGCCACGGGTTTTGCAGCAGAGAGTGCAAATAATGAATGCTCTGCTTCTCCCTCCACCGTCCGCCACCACCGCTCGCTTCCTCCGCCACCGCAATTTCTGTCAACAATCACTCTCCACCACCTCTTATAAGCACTTGCCTCTCCGTTCATCCGTCACCTCACTCTCCTTATCGGAAGACGATGTAATTACAGATAATGACGACGTTTCACCTTTCTCCCACCGCCGGTACGACTTCTCCCCTTTGCTCCAATT...

Protein

Download Protein FASTA

694 aa · TkA05G451940|TK1151|PROTEIN

MPQPRVLQQRVQIMNALLLPPPSATTARFLRHRNFCQQSLSTTSYKHLPLRSSVTSLSLSEDDVITDNDDVSPFSHRRYDFSPLLQFLSNYSSDDNDSASSDPTDSQLAELYRLVPASLWHYLLKSLASSPSSSTAYALVNWLHKHNLCFSYELLYSILIHSLGRSEMVYEAFLLSQKQTLTPLTYNVLIGACARNDDLEKAVILMNKMRGEGYQSDFANYSLIIQSLVRNNQIDSGLLEKLYDEMISDAIELDVQLLND...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G451940
TK1151 IDTkA05G451940
OH-1004 IDLXL04_022224
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.100
Protein coverage (%)TK1151 45.965 / OH-1004 45.833
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G451940
LocationChr05:113109498-113112712 (+)
DescriptionSimilar to CRP1: Pentatricopeptide repeat-containing protein At5g42310, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g42310 Required for chloroplast protein synthesis and accumulation of subunits of the thylakoid protein complexes.
CRP1 Protein: (dis)similarities between Arabidopsis thaliana and Zea mays.2017 · DOI: 10.3389/fpls.2017.00163

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0548300 Required for the processing and translation of chloroplast mRNAs. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022224 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0045727 positive regulation of translation Biological Process
GO:0048255 mRNA stabilization Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:0042651 thylakoid membrane Cellular Component
KEGG gene cross-reference
ath:AT5G42310
dosa:Os07g0548300
zma:100302579
zma:732792
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.624
Rank 1 · TkA05G451940 · TK1151
Mitochondrion0.237
Rank 2 · TkA05G451940 · TK1151
Nucleus0.075
Rank 3 · TkA05G451940 · TK1151
Cytoplasm0.026
Rank 4 · TkA05G451940 · TK1151
Cell membrane0.012
Rank 5 · TkA05G451940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20946Ctf4_C96-146 aa
PF29070MSC6_N118-208 aa
PF13762MNE1118-162 aa
PF25245TPR_At1g68980121-174 aa
PF13041PPR_2156-173 aa
PF01535PPR156-174 aa
PF12854PPR_1156-173 aa
PF23276TPR_24174-277 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G451940PF20946Ctf4_C961460.611.1
TkA05G451940PF29070MSC6_N1182081.8e-39136.7
TkA05G451940PF13762MNE11181620.002118.8
TkA05G451940PF25245TPR_At1g689801211740.1113.3
TkA05G451940PF13041PPR_21561735.3e-100328.1
TkA05G451940PF01535PPR1561741.7e-89288.7
TkA05G451940PF12854PPR_11561736.8e-76250.4
TkA05G451940PF23276TPR_241742774.3e-42143.9
TkA05G451940PF29070MSC6_N1772771.8e-39136.7
TkA05G451940PF26719TPR_Atp25_C1782450.00218.1
TkA05G451940PF13041PPR_21852295.3e-100328.1
TkA05G451940PF01535PPR1852131.7e-89288.7
TkA05G451940PF12854PPR_11852106.8e-76250.4
TkA05G451940PF13812PPR_31852285.9e-74244.8
TkA05G451940PF17177PPR_long1852904.8e-42144.4
TkA05G451940PF24760TPR_IF140_C1862101.7e-0525.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L844Arabidopsis thalianasp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, chloroplastic63.500%Swiss-ProtLow
Q84ZD2Oryza sativa subsp. japonicasp|Q84ZD2|CRP1_ORYSJ Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic34.400%Swiss-ProtLow

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