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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA05G451940
Query referenceTK1151
LocationChr05:113109498-113112712 (+)
DescriptionSimilar to CRP1: Pentatricopeptide repeat-containing protein At5g42310%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022224 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g42310 Required for chloroplast protein synthesis and accumulation of subunits of the thylakoid protein complexes.
CRP1 Protein: (dis)similarities between Arabidopsis thaliana and Zea mays.2017 · DOI: 10.3389/fpls.2017.00163

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0548300 Required for the processing and translation of chloroplast mRNAs. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006417regulation of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010239chloroplast mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045727positive regulation of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.911; coverage=90.23; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048255mRNA stabilizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.253; coverage=85.345; evalue=1.27e-63; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042644chloroplast nucleoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042651thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003727single-stranded RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.253; coverage=85.345; evalue=1.27e-63; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G42310KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=67.601; coverage=92.241; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os07g0548300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.025; coverage=90.23; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:100302579KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.253; coverage=85.345; evalue=1.27e-63UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGzma:732792KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.911; coverage=90.23; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release