RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G449380
Reference: TK1151 Chr: Chr05 Coordinates: 112354603-112363211 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1716 bp · TkA05G449380|TK1151|cDNA

ATGCTTCAGTCAAGGCCTCTTCCCTCAATTGTAAATTTTAACAAAATGTTATCATCTCTCGTCAAATTCAAGCATTATTCTACTGCTATATCTATGATACATCAACTAGGCCTTTTGGGTCTCAACCCTTTGGTGAAGCCTGATATATATGCTTTTCAAATCGCGATAAACTGTTTTTGCCATTCAGATCGTGTGTGTTTCGCGTTTTCTGTTTTAGGGAAGGTTATGAAACTTGGTTACGAACCAAATTGCCCTGTTTT...

CDS

Download CDS FASTA

1716 bp · TkA05G449380|TK1151|CDS

ATGCTTCAGTCAAGGCCTCTTCCCTCAATTGTAAATTTTAACAAAATGTTATCATCTCTCGTCAAATTCAAGCATTATTCTACTGCTATATCTATGATACATCAACTAGGCCTTTTGGGTCTCAACCCTTTGGTGAAGCCTGATATATATGCTTTTCAAATCGCGATAAACTGTTTTTGCCATTCAGATCGTGTGTGTTTCGCGTTTTCTGTTTTAGGGAAGGTTATGAAACTTGGTTACGAACCAAATTGCCCTGTTTT...

Protein

Download Protein FASTA

571 aa · TkA05G449380|TK1151|PROTEIN

MLQSRPLPSIVNFNKMLSSLVKFKHYSTAISMIHQLGLLGLNPLVKPDIYAFQIAINCFCHSDRVCFAFSVLGKVMKLGYEPNCPVFNTLIWGLCNDGKLYQAVNFFDQIVKNGIEPNVFTYSILINGLCKLGRTSSALVLLKKMERSRACKPNIVAYNTVIDGLCKNEQVTDALNLFYEMIGRGITPNVITYSCLIQGVCDFELWDEAKRLFEDMFAQNIPRNLQTYNILIDALCKEGKATEAHHLFASMIKEGASPDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G449380
TK1151 IDTkA05G449380
OH-1004 IDLXL04_022183
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 32.750 / OH-1004 31.323
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G449380
LocationChr05:112354603-112363211 (-)
DescriptionSimilar to At1g12700: Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g12700 Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial. No verified direct reference in this release
At1g12775 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial. No verified direct reference in this release
At1g12300 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial. No verified direct reference in this release
At3g22470 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial. No verified direct reference in this release
At5g41170 Pentatricopeptide repeat-containing protein At5g41170, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022183 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G12700
ath:AT1G62930
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.651
Rank 1 · TkA05G449380 · TK1151
Plastid0.101
Rank 2 · TkA05G449380 · TK1151
Cytoplasm0.101
Rank 3 · TkA05G449380 · TK1151
Nucleus0.077
Rank 4 · TkA05G449380 · TK1151
Peroxisome0.017
Rank 5 · TkA05G449380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_28-61 aa
PF13812PPR_38-20 aa
PF12921ATP138-35 aa
PF01535PPR13-36 aa
PF17177PPR_long27-76 aa
PF12854PPR_145-71 aa
PF13041PPR_247-83 aa
PF23276TPR_2450-144 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G449380PF13041PPR_28612e-180585.6
TkA05G449380PF13812PPR_38202.3e-67223.7
TkA05G449380PF12921ATP138350.0004520.8
TkA05G449380PF01535PPR13368.2e-117374.4
TkA05G449380PF17177PPR_long27763.9e-38131.7
TkA05G449380PF12854PPR_145717.7e-166538.1
TkA05G449380PF13041PPR_247832e-180585.6
TkA05G449380PF23276TPR_24501442.3e-34118.9
TkA05G449380PF01535PPR54798.2e-117374.4
TkA05G449380PF29070MSC6_N591439.1e-32111.3
TkA05G449380PF13812PPR_3711272.3e-67223.7
TkA05G449380PF12854PPR_1791097.7e-166538.1
TkA05G449380PF29070MSC6_N822149.1e-32111.3
TkA05G449380PF12921ATP13821120.0004520.8
TkA05G449380PF13041PPR_2831312e-180585.6
TkA05G449380PF01535PPR861158.2e-117374.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C7Q7Arabidopsis thalianasp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial48.900%Swiss-ProtLow
Q9LPX2Arabidopsis thalianasp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial42.900%Swiss-ProtLow
Q0WKV3Arabidopsis thalianasp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial40.200%Swiss-ProtLow
Q6NQ83Arabidopsis thalianasp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial40.000%Swiss-ProtLow
Q9FLL3Arabidopsis thalianasp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170, mitochondrial41.000%Swiss-ProtLow

JBrowse

View in Genome Browser