TkA05G448690 | RubberDandelionOmics

Gene overview

TkA05G448690

Reference: TK1151 Chr: Chr05 Coordinates: 112161327-112168389 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4700 bp · TkA05G448690|TK1151|cDNA

AATAGGTCGATATTTTGATCTAAGCCGTTGAAATAATGAACGGTTGACGTGCCATAATGTGATTAAACCCACAAGATTCCTTCCCCTGCACCAACAACTAGAAGCAGACTCTAGAGCCTCCTCTGTTTGTTTGTCCCTTTCCCATTTCATCATCATCGTCATCAATCCTCTTTATCATTCAAACCCTACACACCAATCCATCTCTATCTCATGTACTCCTGCTCGCCCTCTTACTTACCCTACCTCTTTTGTTCTTCTTC...

CDS

Download CDS FASTA

3144 bp · TkA05G448690|TK1151|CDS

ATGATGATGTCATTCAGACATTCACTACAGACAACCAGCTTTCAGAACTTGAAGAGAGAGATAGAGATGGGGGTTCCAGTTCGGCCAGCAGGGGTGATGGGCGCGGATAATCTGAGCGAGAAAGCGGCAAAGATGAGGGAGTCACTGCTGAAGAGTCAGTCAATCACAGACAACATGGTTTCCATCCTTGGTTCCTTCGACCACCGTCTCTCCGCCCTAGAAACCGCCATGCGCCCAACTCAGATCAGAACACATGCTAT...

Protein

Download Protein FASTA

1047 aa · TkA05G448690|TK1151|PROTEIN

MMMSFRHSLQTTSFQNLKREIEMGVPVRPAGVMGADNLSEKAAKMRESLLKSQSITDNMVSILGSFDHRLSALETAMRPTQIRTHAIRRAHENIDRTLKSADVILDRFDLSCEILRGPHEDLESYLEAIEQLRSNIVFFTNNKSFKSSDGVISHASNLLSKAISKLEQEYKQLLSSYSKSVDPDRLYECLPSSLRPSSGSPDANGKNPSNSHTGHITAENAVFAPLILIPPRVLPLLHDLAQHMVQAGHLQQCLVVYRDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G448690`
TK1151 ID	TkA05G448690
OH-1004 ID	LXL04_022167
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.200
Protein coverage (%)	TK1151 97.994 / OH-1004 99.711 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G448690

Location Chr05:112161327-112168389 (-)

Description Similar to EXO70A1: Exocyst complex component EXO70A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03540`	Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.	AtEXO70A1, a member of a family of putative exocyst subunits specifically expanded in land plants, is important for polar growth and plant development.2006 · DOI: 10.1111/j.1365-313x.2006.02854.x Arabidopsis exocyst subunits SEC8 and EXO70A1 and exocyst interactor ROH1 are involved in the localized deposition of seed coat pectin.2010 · DOI: 10.1111/j.1469-8137.2010.03372.x The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation.2010 · DOI: 10.1105/tpc.110.074351 The exocyst complex contributes to PIN auxin efflux carrier recycling and polar auxin transport in Arabidopsis.2013 · DOI: 10.1111/tpj.12074 EXO70A1-mediated vesicle trafficking is critical for tracheary element development in Arabidopsis.2013 · DOI: 10.1105/tpc.113.112144 Microtubule-dependent targeting of the exocyst complex is necessary for xylem development in Arabidopsis.2017 · DOI: 10.1111/nph.14267
`At5g52350`	Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.	No verified direct reference in this release
`At5g58430`	Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole.	Arabidopsis exocyst subcomplex containing subunit EXO70B1 is involved in autophagy-related transport to the vacuole.2013 · DOI: 10.1111/tra.12101 The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347
`At1g07000`	Component of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole.	The role for the exocyst complex subunits Exo70B2 and Exo70H1 in the plant-pathogen interaction.2011 · DOI: 10.1093/jxb/erq402 The ubiquitin ligase PUB22 targets a subunit of the exocyst complex required for PAMP-triggered responses in Arabidopsis.2012 · DOI: 10.1105/tpc.112.104463 The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.2016 · DOI: 10.1105/tpc.16.00347
`At5g13990`	Required for optimal tip growth of pollen tube.	EXO70C2 Is a Key Regulatory Factor for Optimal Tip Growth of Pollen.2017 · DOI: 10.1104/pp.16.01282 Regulation of Exocyst Function in Pollen Tube Growth by Phosphorylation of Exocyst Subunit EXO70C2.2020 · DOI: 10.3389/fpls.2020.609600

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022167 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000919 cell plate assembly Biological Process

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006887 exocytosis Biological Process

GO:0006952 defense response Biological Process

GO:0006955 immune response Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0009630 gravitropism Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT1G07000

ath:AT5G03540

ath:AT5G13990

ath:AT5G52350

ath:AT5G58430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.595

Rank 1 · TkA05G448690 · TK1151

Nucleus0.323

Rank 2 · TkA05G448690 · TK1151

Cell membrane0.159

Rank 3 · TkA05G448690 · TK1151

Golgi apparatus0.068

Rank 4 · TkA05G448690 · TK1151

Endoplasmic reticulum0.064

Rank 5 · TkA05G448690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20669Exo70_N97-175 aa

PF03081Exo70_C117-184 aa

PF26086Niban2120-185 aa

PF03081Exo70_C296-540 aa

PF26086Niban2349-455 aa

PF11521TFIIE-A_C613-649 aa

PF07706TAT_ubiq643-654 aa

PF11521TFIIE-A_C666-680 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G448690	`PF20669`	Exo70_N	97	175	3.2e-16	60.1
TkA05G448690	`PF03081`	Exo70_C	117	184	8.1e-82	275.9
TkA05G448690	`PF26086`	Niban2	120	185	0.035	15.0
TkA05G448690	`PF03081`	Exo70_C	296	540	8.1e-82	275.9
TkA05G448690	`PF26086`	Niban2	349	455	0.035	15.0
TkA05G448690	`PF11521`	TFIIE-A_C	613	649	3.4	8.8
TkA05G448690	`PF07706`	TAT_ubiq	643	654	0.15	12.9
TkA05G448690	`PF11521`	TFIIE-A_C	666	680	3.4	8.8
TkA05G448690	`PF07706`	TAT_ubiq	674	685	0.15	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZD3`	Arabidopsis thaliana	sp\|Q9LZD3\|E70A1_ARATH Exocyst complex component EXO70A1	75.400%	Swiss-Prot	Low
`F4KG58`	Arabidopsis thaliana	sp\|F4KG58\|E70A3_ARATH Exocyst complex component EXO70A3	57.100%	Swiss-Prot	Low
`Q9FGH9`	Arabidopsis thaliana	sp\|Q9FGH9\|E70B1_ARATH Exocyst complex component EXO70B1	33.100%	Swiss-Prot	Low
`Q9LMJ4`	Arabidopsis thaliana	sp\|Q9LMJ4\|E70B2_ARATH Exocyst complex component EXO70B2	28.500%	Swiss-Prot	Low
`Q9FFX6`	Arabidopsis thaliana	sp\|Q9FFX6\|E70C2_ARATH Exocyst complex component EXO70C2	33.600%	Swiss-Prot	Low

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