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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G444640
Reference: TK1151 Chr: Chr05 Coordinates: 111189487-111193994 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2140 bp · TkA05G444640|TK1151|cDNA

TTTAAATAGCATTTATTCATGTGTATAGATCCAAGAGCACCACCAAACCGGTTCCTTCCCCTTCGTACAGGTTTTCTACGACTGGTGCCACATGTCCAAGCACGCCTTTTGGGTTCGGGTTGGTTGCAACCATCTCAACTGCTGATATCGGTTGTGTCTGATTTACCTTGAACCCTCATACACCAGAGTTCCCAACACACCGAGTACGACAGCGTTCCATTTCTGCCGTTTCCCTGTCGGCGAAACGTGCCGTTTGATTG...

CDS

Download CDS FASTA

1461 bp · TkA05G444640|TK1151|CDS

ATGGGATCAGACAGTTGCAACTGGCATTCAGATTTGGACTATGACCAATGGGTTGCCCTTCCAGTAACTGGCCCACGACCATCATCTCGTTACAAGCATACTGCAGGCATCATTAATGAAAAGCTGTACATTGTTGGTGGAAGTCGTAATGGACGATATTTATCTGATGTTCAGGCACTTGATCTAAGAAACTTAATTTGGTCCACAATCAAATTAAAACCTCAGTCAGATCCTGATAACAAGAAAGATGGTAAATTATT...

Protein

Download Protein FASTA

486 aa · TkA05G444640|TK1151|PROTEIN

MGSDSCNWHSDLDYDQWVALPVTGPRPSSRYKHTAGIINEKLYIVGGSRNGRYLSDVQALDLRNLIWSTIKLKPQSDPDNKKDGKLLEAFPATSGHSMVKWGNKLLLLGGHSKNTSDTVAVRFIDLESHVSGLIETTGKIPVARGGQSVTLIGSKLIMFGGEDKNRRLLNDVHVLDLETMIWNVAETTRTPPAPRFDHTAAVHGDRYLQIFGGCSHSTFFSDLHVLDLETLEWSQPQIQGNIVSPRAGHAGVSIDEKWFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G444640
TK1151 IDTkA05G444640
OH-1004 IDLXL04_022096
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 94.553
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G444640
LocationChr05:111189487-111193994 (-)
DescriptionSimilar to ACBP6: Acyl-CoA-binding domain-containing protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g27630 Binds medium- and long-chain acyl-CoA esters with very high affinity.
ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.2004 · DOI: 10.1007/s11103-004-0642-z
At3g05420 Binds medium- and long-chain acyl-CoA esters with very high affinity.
ACBP4 and ACBP5, novel Arabidopsis acyl-CoA-binding proteins with kelch motifs that bind oleoyl-CoA.2004 · DOI: 10.1007/s11103-004-0642-z
Arabidopsis acyl-CoA-binding proteins ACBP4 and ACBP5 are subcellularly localized to the cytosol and ACBP4 depletion affects membrane lipid composition.2008 · DOI: 10.1007/s11103-008-9392-7

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0835600 Binds medium- and long-chain acyl-CoA esters with high affinity.
The rice acyl-CoA-binding protein gene family: phylogeny, expression and functional analysis.2011 · DOI: 10.1111/j.1469-8137.2010.03546.x
Subcellular localization of rice acyl-CoA-binding proteins (ACBPs) indicates that OsACBP6::GFP is targeted to the peroxisomes.2014 · DOI: 10.1111/nph.12809
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022096 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001666 response to hypoxia Biological Process
GO:0006869 lipid transport Biological Process
GO:0007165 signal transduction Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009753 response to jasmonic acid Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0010008 endosome membrane Cellular Component
GO:0000062 fatty-acyl-CoA binding Molecular Function
KEGG gene cross-reference
ath:AT3G05420
ath:AT5G27630
bta:533613
ddi:DDB_G0268860
dosa:Os03g0835600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.509
Rank 1 · TkA05G444640 · TK1151
Nucleus0.284
Rank 2 · TkA05G444640 · TK1151
Golgi apparatus0.107
Rank 3 · TkA05G444640 · TK1151
Cell membrane0.101
Rank 4 · TkA05G444640 · TK1151
Peroxisome0.086
Rank 5 · TkA05G444640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13854Kelch_HCF8-47 aa
PF13964Beta-prop_Calicin8-70 aa
PF24681Kelch_KLHDC2_KLHL20_DRC79-74 aa
PF24981Beta-prop_ATRN-LZTR110-149 aa
PF24996NANM14-61 aa
PF13415Beta-prop_FBX4216-73 aa
PF25210Kelch_FKB9527-77 aa
PF13418Beta-prop_TYW427-73 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G444640PF13854Kelch_HCF8473.1e-31109.6
TkA05G444640PF13964Beta-prop_Calicin8700.004916.6
TkA05G444640PF24681Kelch_KLHDC2_KLHL20_DRC79742.4e-68230.4
TkA05G444640PF24981Beta-prop_ATRN-LZTR1101491.5e-51176.1
TkA05G444640PF24996NANM14619.9e-0831.9
TkA05G444640PF13415Beta-prop_FBX4216732.8e-51174.8
TkA05G444640PF25210Kelch_FKB9527771.2e-1455.3
TkA05G444640PF13418Beta-prop_TYW427737.9e-1246.3
TkA05G444640PF01344Kelch_130703.8e-29100.5
TkA05G444640PF07646Kelch_230628.6e-2173.5
TkA05G444640PF13854Kelch_HCF512133.1e-31109.6
TkA05G444640PF25210Kelch_FKB95672071.2e-1455.3
TkA05G444640PF24996NANM901259.9e-0831.9
TkA05G444640PF13415Beta-prop_FBX42922172.8e-51174.8
TkA05G444640PF13854Kelch_HCF932633.1e-31109.6
TkA05G444640PF01344Kelch_1931173.8e-29100.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RWD9Arabidopsis thalianasp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 544.300%Swiss-ProtMedium
Q9MA55Arabidopsis thalianasp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 443.200%Swiss-ProtMedium
Q75LJ4Oryza sativa subsp. japonicasp|Q75LJ4|ACBP6_ORYSJ Acyl-CoA-binding domain-containing protein 636.500%Swiss-ProtMedium

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