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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G444250
Reference: TK1151 Chr: Chr05 Coordinates: 111086073-111088568 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1270 bp · TkA05G444250|TK1151|cDNA

CACCGAGCAGGCCAACAGACAACAGGATCCTTCATTTGTCTCACCCATTCAAGTCTCTCTACTATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGACAGAAATCATCGCAGAAATTGGAATTGGGGATTAAAAAAAATCACATAAAAATGGATTCTCCATCGTCTCCATCAGCAACACCGTATATGAGCGGCGAAATCAGAGGTGGAAAAAGATCACAGATTAGTCCAACTAGTTACGATTACTCCTTCAAGATTC...

CDS

Download CDS FASTA

699 bp · TkA05G444250|TK1151|CDS

ATGGATTCTCCATCGTCTCCATCAGCAACACCGTATATGAGCGGCGAAATCAGAGGTGGAAAAAGATCACAGATTAGTCCAACTAGTTACGATTACTCCTTCAAGATTCTCGTGATCGGAGATTCAGGCGTCGGCAAAAGCAGTCTTCTTCTCAGTTTCGTTAGTTCTCAAGATCAGCTTCAAGATGTTTCTCCTACTATTGGTGTTGATTTCAAGATGAAAATAATCACAATTGAAGGAAAACGACTCAAATTGACCAT...

Protein

Download Protein FASTA

232 aa · TkA05G444250|TK1151|PROTEIN

MDSPSSPSATPYMSGEIRGGKRSQISPTSYDYSFKILVIGDSGVGKSSLLLSFVSSQDQLQDVSPTIGVDFKMKIITIEGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSEIWAQEVELYSTNPDCVKILVGNKVDRDVERAVTVEEGIALAKKHNCLFYECSARTRANVQQCFKDLTLKILDKPGLLEQGSVLVKRQILKEKQLSMKKRSDNCCS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G444250
TK1151 IDTkA05G444250
OH-1004 IDLXL04_022091
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G444250
LocationChr05:111086073-111088568 (-)
DescriptionSimilar to RABC2A: Ras-related protein RABC2a
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g03530 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At3g09910 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g43890 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022091 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0015031 protein transport Biological Process
GO:0034389 lipid droplet organization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005811 lipid droplet Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0012505 endomembrane system Cellular Component
KEGG gene cross-reference
ath:AT1G43890
ath:AT3G09910
ath:AT5G03530
dre:445055
vcn:VOLCADRAFT_108490
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.502
Rank 1 · TkA05G444250 · TK1151
Golgi apparatus0.295
Rank 2 · TkA05G444250 · TK1151
Cell membrane0.211
Rank 3 · TkA05G444250 · TK1151
Lysosome / Vacuole0.173
Rank 4 · TkA05G444250 · TK1151
Endoplasmic reticulum0.126
Rank 5 · TkA05G444250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf31-194 aa
PF00735Septin32-92 aa
PF12775AAA_732-59 aa
PF00071Ras35-198 aa
PF08477Roc35-152 aa
PF01926MMR_HSR135-126 aa
PF04670Gtr1_RagA35-152 aa
PF13555AAA_2935-50 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G444250PF00025Arf311945.4e-1556.0
TkA05G444250PF00735Septin32929.7e-0522.5
TkA05G444250PF12775AAA_732590.1612.2
TkA05G444250PF00071Ras351982.8e-54183.8
TkA05G444250PF08477Roc351521e-30107.1
TkA05G444250PF01926MMR_HSR1351262e-0835.1
TkA05G444250PF04670Gtr1_RagA351520.0001522.0
TkA05G444250PF13555AAA_2935500.02615.0
TkA05G444250PF07475Hpr_kinase_C35560.1612.2
TkA05G444250PF13479AAA_2435530.2112.0
TkA05G444250PF03193RsgA_GTPase36640.0007420.1
TkA05G444250PF13191AAA_1636550.03315.4
TkA05G444250PF13401AAA_2236630.04214.9
TkA05G444250PF20703nSTAND136510.06313.6
TkA05G444250PF00005ABC_tran36590.0714.5
TkA05G444250PF00009GTP_EFTU681932.6e-0627.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O49841Arabidopsis thalianasp|O49841|RAC2A_ARATH Ras-related protein RABC2a69.300%Swiss-ProtHigh
Q9SF92Arabidopsis thalianasp|Q9SF92|RAC2B_ARATH Ras-related protein RABC2b70.600%Swiss-ProtHigh
O23657Arabidopsis thalianasp|O23657|RABC1_ARATH Ras-related protein RABC164.200%Swiss-ProtHigh

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