LXL04_022091 | RubberDandelionOmics

Gene overview

LXL04_022091

Reference: OH-1004 Chr: Chr04 Coordinates: 144452632-144454555 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

699 bp · LXL04_022091|LXL04_022091|OH1004|cDNA

ATGGATTCTCCATCGTCTCCATCAGCAACACCGTATATGAGCGGCGAAATCAGAGGTGGAAAAAGATCACAGATTAGTCCAACTAGTTACGATTACTCCTTCAAGATTCTCGTGATCGGAGATTCAGGCGTCGGCAAAAGCAGTCTTCTTCTCAGTTTCGTTAGTTCTCAAGATCAGCTTCAAGATGTTTCTCCTACTATTGGTGTTGATTTCAAGATGAAAATAATCACAATTGAAGGAAAACGACTCAAATTGACCAT...

CDS

Download CDS FASTA

699 bp · LXL04_022091|LXL04_022091|OH1004|CDS

ATGGATTCTCCATCGTCTCCATCAGCAACACCGTATATGAGCGGCGAAATCAGAGGTGGAAAAAGATCACAGATTAGTCCAACTAGTTACGATTACTCCTTCAAGATTCTCGTGATCGGAGATTCAGGCGTCGGCAAAAGCAGTCTTCTTCTCAGTTTCGTTAGTTCTCAAGATCAGCTTCAAGATGTTTCTCCTACTATTGGTGTTGATTTCAAGATGAAAATAATCACAATTGAAGGAAAACGACTCAAATTGACCAT...

Protein

Download Protein FASTA

232 aa · LXL04_022091|LXL04_022091|OH1004|PROTEIN

MDSPSSPSATPYMSGEIRGGKRSQISPTSYDYSFKILVIGDSGVGKSSLLLSFVSSQDQLQDVSPTIGVDFKMKIITIEGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSEIWAREVELYSTNPDCVKILVGNKVDRDVERAVTVEEGIALAKKHSCLFYECSARTRANVQQCFKDLTLKILDKPGLLEQGSVLVKRQILKEKQLSMKKRSDNCCS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022091`
TK1151 ID	TkA05G444250
OH-1004 ID	LXL04_022091
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022091

Location Chr04:144452632-144454555 (-)

Description Similar to RABC2A: Ras-related protein RABC2a

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03530`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At1g43890`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At3g09910`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022091 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0015031 protein transport Biological Process

GO:0034389 lipid droplet organization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0012505 endomembrane system Cellular Component

KEGG gene cross-reference

ath:AT1G43890

ath:AT3G09910

ath:AT5G03530

dre:445055

vcn:VOLCADRAFT_108490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.496

Rank 1 · LXL04_022091 · OH-1004

Golgi apparatus0.301

Rank 2 · LXL04_022091 · OH-1004

Cell membrane0.214

Rank 3 · LXL04_022091 · OH-1004

Lysosome / Vacuole0.169

Rank 4 · LXL04_022091 · OH-1004

Endoplasmic reticulum0.128

Rank 5 · LXL04_022091 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025.28Arf31-194 aa

PF00071.29Ras35-198 aa

PF08477.20Roc35-152 aa

PF01926.30MMR_HSR135-125 aa

PF00009.34GTP_EFTU68-193 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022091	`PF00025.28`	Arf	31	194	8.7e-15	55.3
LXL04_022091	`PF00071.29`	Ras	35	198	8.2e-54	182.3
LXL04_022091	`PF08477.20`	Roc	35	152	9.7e-31	107.2
LXL04_022091	`PF01926.30`	MMR_HSR1	35	125	2.5e-08	34.7
LXL04_022091	`PF00009.34`	GTP_EFTU	68	193	2.8e-06	27.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O49841`	Arabidopsis thaliana	Ras-related protein RABC2a	68.780%	Swiss-Prot	strong database homology
`O23657`	Arabidopsis thaliana	Ras-related protein RABC1	67.196%	Swiss-Prot	strong database homology
`Q9SF92`	Arabidopsis thaliana	Ras-related protein RABC2b	68.449%	Swiss-Prot	strong database homology

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