TkA05G439320 | RubberDandelionOmics

Gene overview

TkA05G439320

Reference: TK1151 Chr: Chr05 Coordinates: 109708934-109710908 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1278 bp · TkA05G439320|TK1151|cDNA

CTTTAATCAAATGATCAGTTAAACAAGAAATTCCCCGTCGACTAAGATCTACTCCGCCGTACTCCCGTCGTCGTCTCCTATTTCCGTCATCCAATAGACATGCTCAATTTCTTCCCATCACAAAATACTCAGATTAAACTATAAAAAAAACCGGATCACATCTTCTAAGTCACGGTCCTGTTGTCATGAGTTCTTCGGCGGTACAGCCGGATTCACAAAAGTTTGTAAAGGCCTAGCGGTAGTTCTCTGTTTTGTGGACA...

CDS

Download CDS FASTA

411 bp · TkA05G439320|TK1151|CDS

ATGTTGAACAATCGATACATGGGGTTCTTATTAGCACAATCGGTCTTCTTTTCATCGGAAAGCACTTTGAACCCCATCTGGGGTTCTAGAGAAATCTTCATATTCATCTTCCTTGTCAATTTCTTGATTTCCGTGTGTACATTCATCATGGCTATCTCCTTGTATTACGTCACAATGGACGAAAATTATCTTTACATGCCAATTTCTGGATTTGGTGGGGCCCTTTTAGGTATCTTAGTTGGCGTCAAACAGATAGTTCC...

Protein

Download Protein FASTA

136 aa · TkA05G439320|TK1151|PROTEIN

MLNNRYMGFLLAQSVFFSSESTLNPIWGSREIFIFIFLVNFLISVCTFIMAISLYYVTMDENYLYMPISGFGGALLGILVGVKQIVPDQEFSPIKIKAKWLPSIVLFSVYCLELLYRRPETCLPIADFGVYWLDIS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G439320`
TK1151 ID	TkA05G439320
OH-1004 ID	LXL04_022022
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	85.300
Protein coverage (%)	TK1151 80.147 / OH-1004 36.700 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G439320

Location Chr05:109708934-109710908 (-)

Description Similar to RBL19: Rhomboid-like protein 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07950`	Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022022 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0015031 protein transport Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0017119 Golgi transport complex Cellular Component

GO:0030137 COPI-coated vesicle Cellular Component

GO:0032580 Golgi cisterna membrane Cellular Component

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT3G07950

bta:532459

hsa:11070

mmu:56395

sce:YOL107W

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.702

Rank 1 · TkA05G439320 · TK1151

Golgi apparatus0.134

Rank 2 · TkA05G439320 · TK1151

Nucleus0.105

Rank 3 · TkA05G439320 · TK1151

Cytoplasm0.095

Rank 4 · TkA05G439320 · TK1151

Lysosome / Vacuole0.058

Rank 5 · TkA05G439320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08551DUF17514-130 aa

PF30641DUF868633-88 aa

PF30641DUF8686105-110 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G439320	`PF08551`	DUF1751	4	130	1e-23	84.8
TkA05G439320	`PF30641`	DUF8686	33	88	0.017	16.0
TkA05G439320	`PF30641`	DUF8686	105	110	0.017	16.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LF05`	Arabidopsis thaliana	sp\|Q8LF05\|RBL19_ARATH Rhomboid-like protein 19	53.100%	Swiss-Prot	High

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