LXL04_022022 | RubberDandelionOmics

Gene overview

LXL04_022022

Reference: OH-1004 Chr: Chr04 Coordinates: 142496105-142497682 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

894 bp · LXL04_022022|LXL04_022022|OH1004|cDNA

ATGAGTTCTTCGGCAGGTACAGCCGGATTCACAAAAGTTTGTAAAGGCCTAGCGGTAGTTCTTGTTTGTGGACATATAGCTATTCAGATCTGCCCTTCTTCGCTTACCTATGTTGCCCTCATTCCTGCAAGGACAATTCCTTTTGGTTGGAATCTGTTAACAGCGAGTTATGTTGAACAATCGATACATGGGGTTCTTATTAGCACAATCGGTCTTCTTTTCATCGGAAAGCACCTTGAACCCATCTGGGGTTCTAGAGA...

CDS

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894 bp · LXL04_022022|LXL04_022022|OH1004|CDS

ATGAGTTCTTCGGCAGGTACAGCCGGATTCACAAAAGTTTGTAAAGGCCTAGCGGTAGTTCTTGTTTGTGGACATATAGCTATTCAGATCTGCCCTTCTTCGCTTACCTATGTTGCCCTCATTCCTGCAAGGACAATTCCTTTTGGTTGGAATCTGTTAACAGCGAGTTATGTTGAACAATCGATACATGGGGTTCTTATTAGCACAATCGGTCTTCTTTTCATCGGAAAGCACCTTGAACCCATCTGGGGTTCTAGAGA...

Protein

Download Protein FASTA

297 aa · LXL04_022022|LXL04_022022|OH1004|PROTEIN

MSSSAGTAGFTKVCKGLAVVLVCGHIAIQICPSSLTYVALIPARTIPFGWNLLTASYVEQSIHGVLISTIGLLFIGKHLEPIWGSREIFIFIFLVNFLTSVCTFIMAISLYYVTMDENYLYMPISGFGGALLGILVGVKQIVPDQEFSPIKIKAKWLPSIVLFLSIVWSFFIEDPETCLPILIFGAYIGWIYLRYFQRKQETKIKGDPSDEFAFSTFFPGFLRPLIDPIASLFHQMMCGRSEGSIEARGYTVGSVALSGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022022`
TK1151 ID	TkA05G439320
OH-1004 ID	LXL04_022022
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	85.300
Protein coverage (%)	TK1151 80.147 / OH-1004 36.700 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022022

Location Chr04:142496105-142497682 (-)

Description Similar to RBL19: Rhomboid-like protein 19

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07950`	Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022022 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0015031 protein transport Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0017119 Golgi transport complex Cellular Component

GO:0030137 COPI-coated vesicle Cellular Component

GO:0032580 Golgi cisterna membrane Cellular Component

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT3G07950

bta:532459

hsa:11070

mmu:56395

sce:YOL107W

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.388

Rank 1 · LXL04_022022 · OH-1004

Golgi apparatus0.345

Rank 2 · LXL04_022022 · OH-1004

Cytoplasm0.209

Rank 3 · LXL04_022022 · OH-1004

Cell membrane0.124

Rank 4 · LXL04_022022 · OH-1004

Lysosome / Vacuole0.124

Rank 5 · LXL04_022022 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08551.17DUF175116-282 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022022	`PF08551.17`	DUF1751	16	282	4e-71	240.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LF05`	Arabidopsis thaliana	Rhomboid-like protein 19	61.486%	Swiss-Prot	strong database homology

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