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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G438870
Reference: TK1151 Chr: Chr05 Coordinates: 109598106-109598768 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

663 bp · TkA05G438870|TK1151|cDNA

ATGAGGCAAGAAGCTGAAGAAACATTTAATTCCATGGTGAGATCGGGTATTAAACCCGATCTACTTGCTTATTCGGTAATGTTAGATGTTTTATTAAGATTTGATGTAGGTAAAGCTATGATGTTGTATAACAACATGGTTCGTGATGGGTTCACACTTGATTTGTCGCTTTATGAGCTTTTAATGAAATCTCTTCACCATGAAAACAGAGAAAATCAGGTTGAAAAGGTAATTGAAGATATGCGGAAGTTATGTAATTT...

CDS

Download CDS FASTA

663 bp · TkA05G438870|TK1151|CDS

ATGAGGCAAGAAGCTGAAGAAACATTTAATTCCATGGTGAGATCGGGTATTAAACCCGATCTACTTGCTTATTCGGTAATGTTAGATGTTTTATTAAGATTTGATGTAGGTAAAGCTATGATGTTGTATAACAACATGGTTCGTGATGGGTTCACACTTGATTTGTCGCTTTATGAGCTTTTAATGAAATCTCTTCACCATGAAAACAGAGAAAATCAGGTTGAAAAGGTAATTGAAGATATGCGGAAGTTATGTAATTT...

Protein

Download Protein FASTA

220 aa · TkA05G438870|TK1151|PROTEIN

MRQEAEETFNSMVRSGIKPDLLAYSVMLDVLLRFDVGKAMMLYNNMVRDGFTLDLSLYELLMKSLHHENRENQVEKVIEDMRKLCNLNPQVISSTLVKGGSYDYAAKMFKLAILEGYDLDHESLLSILSSYSSSGRHPEALDLLDFLKEHAPESGRIITEALIVILCRSNQLDAAIDEYRKSRNSNTLSGSSSMYESLIEGCESAKLFSEASQVLFRSCW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G438870
TK1151 IDTkA05G438870
OH-1004 IDLXL04_022008
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 91.364 / OH-1004 49.024
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G438870
LocationChr05:109598106-109598768 (+)
DescriptionSimilar to LBD1: LOB domain-containing protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18110 May play a role in embryogenesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022008 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009736 cytokinin-activated signaling pathway Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0010016 shoot system morphogenesis Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0048364 root development Biological Process
GO:0080117 secondary growth Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G07900
ath:AT1G16530
ath:AT2G28500
ath:AT2G30130
ath:AT3G18110
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.653
Rank 1 · TkA05G438870 · TK1151
Plastid0.189
Rank 2 · TkA05G438870 · TK1151
Nucleus0.093
Rank 3 · TkA05G438870 · TK1151
Cytoplasm0.053
Rank 4 · TkA05G438870 · TK1151
Cell membrane0.014
Rank 5 · TkA05G438870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_32-30 aa
PF13041PPR_23-31 aa
PF29070MSC6_N3-80 aa
PF01535PPR4-17 aa
PF17177PPR_long4-84 aa
PF23276TPR_245-45 aa
PF01535PPR35-51 aa
PF13041PPR_236-65 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G438870PF13812PPR_32301.5e-0732.1
TkA05G438870PF13041PPR_23319.6e-1658.4
TkA05G438870PF29070MSC6_N3802.2e-0524.4
TkA05G438870PF01535PPR4176.9e-1142.3
TkA05G438870PF17177PPR_long4840.004417.1
TkA05G438870PF23276TPR_245450.03614.7
TkA05G438870PF01535PPR35516.9e-1142.3
TkA05G438870PF13041PPR_236659.6e-1658.4
TkA05G438870PF29070MSC6_N38922.2e-0524.4
TkA05G438870PF10366Vps39_141920.01916.0
TkA05G438870PF13812PPR_342831.5e-0732.1
TkA05G438870PF13041PPR_257839.6e-1658.4
TkA05G438870PF12921ATP13571500.005617.3
TkA05G438870PF01535PPR58836.9e-1142.3
TkA05G438870PF01535PPR961126.9e-1142.3
TkA05G438870PF23276TPR_241071830.03614.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5G1S8Arabidopsis thalianasp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic53.400%Swiss-ProtMedium

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