TkA05G435840 | RubberDandelionOmics

Gene overview

TkA05G435840

Reference: TK1151 Chr: Chr05 Coordinates: 108801064-108804025 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1483 bp · TkA05G435840|TK1151|cDNA

AGAGTGGAGAGTCATGGAATTTGTGCAAAAGAAGTGGATTACTTCTCTAGCTTTCTCATGACATGCAACCCATAAGCATATTGCAATGCTATATATAAACCCCATTGCCCTCATCTTCTTCTCACCAACAAACACACACAGTTCCAAACTATCAAAACAACATGACACTAGAAAATCTAAAGCCATATTTAGCTGTCATCTTTTTGCAATTTGGCAATGCAGGTTTAGTTGTAATTGCCAAAGCTGCTCTTAATCATGGC...

CDS

Download CDS FASTA

1155 bp · TkA05G435840|TK1151|CDS

ATGACACTAGAAAATCTAAAGCCATATTTAGCTGTCATCTTTTTGCAATTTGGCAATGCAGGTTTAGTTGTAATTGCCAAAGCTGCTCTTAATCATGGCATGAATCACTACACTTTCGCAGTTTATCGAAACCTCGTTGCCACCCTAGTTATCGCTCCTTTTGCCCTCTTCTTTGAAAGGAAAGGGAGGCCAAAACTGACGTTTTCGATTTTCGTCAAGATAATGTTGCTAGGACTCTTGGAGCCCGTTATCGATCAGAA...

Protein

Download Protein FASTA

384 aa · TkA05G435840|TK1151|PROTEIN

MTLENLKPYLAVIFLQFGNAGLVVIAKAALNHGMNHYTFAVYRNLVATLVIAPFALFFERKGRPKLTFSIFVKIMLLGLLEPVIDQNLYYAGMQYTTATFAIAMCNIIPAMTFLMAWVCRLEKVNIKKIHSIGKIVGTLVTVGGAMIMTIVVGPTIGLPWTKGSATAHNQQPTAAVSPGDNLKGSMMIIAGCLSWSCFYIVQALTLRVYPAELSLTALICAAGTLQGSIVTIIAERGNNEAWKLQWDAGLVTIVYGGVIC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G435840`
TK1151 ID	TkA05G435840
OH-1004 ID	LXL04_021964
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G435840

Location Chr05:108801064-108804025 (+)

Description Similar to At2g39510: WAT1-related protein At2g39510

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39510`	WAT1-related protein At2g39510.	No verified direct reference in this release
`At2g37460`	WAT1-related protein At2g37460.	No verified direct reference in this release
`At4g08290`	WAT1-related protein At4g08290.	No verified direct reference in this release
`At1g21890`	WAT1-related protein At1g21890.	No verified direct reference in this release
`At1g44800`	WAT1-related protein At1g44800.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021964 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006865 amino acid transport Biological Process

GO:0009620 response to fungus Biological Process

GO:0032973 amino acid export across plasma membrane Biological Process

GO:0043090 amino acid import Biological Process

GO:0048316 seed development Biological Process

GO:0080144 intracellular amino acid homeostasis Biological Process

GO:0098712 L-glutamate import across plasma membrane Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G21890

ath:AT1G44800

ath:AT2G37460

ath:AT2G39510

ath:AT4G08290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.519

Rank 1 · TkA05G435840 · TK1151

Lysosome / Vacuole0.185

Rank 2 · TkA05G435840 · TK1151

Endoplasmic reticulum0.149

Rank 3 · TkA05G435840 · TK1151

Golgi apparatus0.075

Rank 4 · TkA05G435840 · TK1151

Cytoplasm0.074

Rank 5 · TkA05G435840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892EamA9-140 aa

PF05653Mg_trans_NIPA30-73 aa

PF10639TMEM23488-147 aa

PF20712CyanoTRADDas_TM136-146 aa

PF09534Trp_oprn_chp155-192 aa

PF00892EamA183-322 aa

PF10639TMEM234209-260 aa

PF20712CyanoTRADDas_TM213-268 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G435840	`PF00892`	EamA	9	140	3.2e-27	96.1
TkA05G435840	`PF05653`	Mg_trans_NIPA	30	73	0.00087	19.3
TkA05G435840	`PF10639`	TMEM234	88	147	2.7	8.8
TkA05G435840	`PF20712`	CyanoTRADDas_TM	136	146	7.7	7.4
TkA05G435840	`PF09534`	Trp_oprn_chp	155	192	0.87	10.2
TkA05G435840	`PF00892`	EamA	183	322	3.2e-27	96.1
TkA05G435840	`PF10639`	TMEM234	209	260	2.7	8.8
TkA05G435840	`PF20712`	CyanoTRADDas_TM	213	268	7.7	7.4
TkA05G435840	`PF05653`	Mg_trans_NIPA	246	324	0.00087	19.3
TkA05G435840	`PF09534`	Trp_oprn_chp	276	323	0.87	10.2
TkA05G435840	`PF10639`	TMEM234	280	321	2.7	8.8
TkA05G435840	`PF20712`	CyanoTRADDas_TM	308	326	7.7	7.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80638`	Arabidopsis thaliana	sp\|O80638\|WTR14_ARATH WAT1-related protein At2g39510	56.200%	Swiss-Prot	High
`Q9ZUS1`	Arabidopsis thaliana	sp\|Q9ZUS1\|WTR13_ARATH WAT1-related protein At2g37460	53.500%	Swiss-Prot	High
`Q9SUF1`	Arabidopsis thaliana	sp\|Q9SUF1\|WTR31_ARATH WAT1-related protein At4g08290	47.100%	Swiss-Prot	Medium
`F4HZQ7`	Arabidopsis thaliana	sp\|F4HZQ7\|WTR5_ARATH WAT1-related protein At1g21890	48.200%	Swiss-Prot	Medium
`Q9LPF1`	Arabidopsis thaliana	sp\|Q9LPF1\|WTR8_ARATH WAT1-related protein At1g44800	44.900%	Swiss-Prot	Medium

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