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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G435620
Reference: TK1151 Chr: Chr05 Coordinates: 108719074-108723198 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2552 bp · TkA05G435620|TK1151|cDNA

ATAAGATACTTGACGTAAATCGTAATCAGCCTCTCTTCTTCTTGAACTCCTCAATCACGCATACCTATTACATACACAGAGATACACATACATACACTCACTCTTGTACATAGATATAGGCTTCGTGTACGTTACGCAGATTGTGTATGAGAGAGCGACTGCAAGAACTTCAGTGTATTGCTGGCACAGTTGAATCGCTGATTCAGATTCTCTTCTCTAATGCCGGCGAAAACACACACGGAGCTTGTTGAATTGTAAGT...

CDS

Download CDS FASTA

2058 bp · TkA05G435620|TK1151|CDS

ATGAAGGGATTCGATCTGTTAAAATCTTCAAGTCTGGTAAAATCTGCTGGATTTGTGTTTGTAGTTCTAGCTTTCTTCTATTTCGGTAAACAATGGTCGGAAGATAATTATCAACGAGTGATCTTCTTTAATTCTTACTCAAATACAAGTGATAAAACCCCTTCGATCTCAATTTCCCCAAATCTTAATAAAACCTTCGATATTATTTCTTTAATTAACAATACAAAGGAAGCGGAAATCCACGATGATCAAACTTTAGC...

Protein

Download Protein FASTA

685 aa · TkA05G435620|TK1151|PROTEIN

MKGFDLLKSSSLVKSAGFVFVVLAFFYFGKQWSEDNYQRVIFFNSYSNTSDKTPSISISPNLNKTFDIISLINNTKEAEIHDDQTLAPIPQPVLLSQSPPPPPPPPPPPPPPPPPPAVQRLGLVDENGVMTNNFEVGDFDPDGMENWNNETESADGDNEGVKVTVRVRKFGMCPASMREYIPCLDNLEAIKRLKSTQKGEKFERHCPEKGKGLNCLVPSPKGYKPPIPWPRSRDEVWYSNVPHAQLAEYKGGQNWITVNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G435620
TK1151 IDTkA05G435620
OH-1004 IDLXL04_012389
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)77.200
Protein coverage (%)TK1151 99.854 / OH-1004 99.108
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G435620
LocationChr05:108719074-108723198 (-)
DescriptionSimilar to At2g39750: Probable methyltransferase PMT11
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g39750 Probable methyltransferase PMT11. No verified direct reference in this release
At5g06050 Probable methyltransferase PMT12. No verified direct reference in this release
At1g77260 Probable methyltransferase PMT10. No verified direct reference in this release
At5g64030 Probable methyltransferase PMT26. No verified direct reference in this release
At2g34300 Probable methyltransferase PMT25. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012389 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0032259 methylation Biological Process
GO:0000138 Golgi trans cisterna Cellular Component
GO:0000139 Golgi membrane Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005768 endosome Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
GO:0005802 trans-Golgi network Cellular Component
KEGG gene cross-reference
ath:AT1G29470
ath:AT1G77260
ath:AT2G34300
ath:AT2G39750
ath:AT5G06050
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.806
Rank 1 · TkA05G435620 · TK1151
Endoplasmic reticulum0.081
Rank 2 · TkA05G435620 · TK1151
Cell membrane0.064
Rank 3 · TkA05G435620 · TK1151
Extracellular0.056
Rank 4 · TkA05G435620 · TK1151
Cytoplasm0.041
Rank 5 · TkA05G435620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08242Methyltransf_1261-73 aa
PF20922Anamorsin_N62-89 aa
PF05308Mito_fiss_reg88-119 aa
PF03141Methyltransf_29179-682 aa
PF05148Methyltransf_8286-327 aa
PF13489Methyltransf_23293-393 aa
PF13847Methyltransf_31298-397 aa
PF13649Methyltransf_25299-391 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G435620PF08242Methyltransf_1261733.7e-0628.3
TkA05G435620PF20922Anamorsin_N62890.09113.2
TkA05G435620PF05308Mito_fiss_reg881193.18.6
TkA05G435620PF03141Methyltransf_291796821.2e-230767.2
TkA05G435620PF05148Methyltransf_82863270.01116.3
TkA05G435620PF13489Methyltransf_232933930.0003321.1
TkA05G435620PF13847Methyltransf_312983977.5e-0729.7
TkA05G435620PF13649Methyltransf_252993912.2e-0835.4
TkA05G435620PF08241Methyltransf_113003941e-0939.6
TkA05G435620PF08242Methyltransf_123003933.7e-0628.3
TkA05G435620PF20922Anamorsin_N3553940.09113.2
TkA05G435620PF05148Methyltransf_83803940.01116.3
TkA05G435620PF13489Methyltransf_235426490.0003321.1
TkA05G435620PF13649Methyltransf_255946372.2e-0835.4
TkA05G435620PF08242Methyltransf_125976393.7e-0628.3
TkA05G435620PF13847Methyltransf_316016537.5e-0729.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22285Arabidopsis thalianasp|O22285|PMTB_ARATH Probable methyltransferase PMT1168.400%Swiss-ProtHigh
Q9FG39Arabidopsis thalianasp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT1264.500%Swiss-ProtHigh
Q94KE1Arabidopsis thalianasp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT1068.500%Swiss-ProtHigh
Q8L7V3Arabidopsis thalianasp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT2648.000%Swiss-ProtMedium
Q0WT31Arabidopsis thalianasp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT2550.300%Swiss-ProtHigh

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