TkA05G434580 | RubberDandelionOmics

Gene overview

TkA05G434580

Reference: TK1151 Chr: Chr05 Coordinates: 108505368-108506904 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

856 bp · TkA05G434580|TK1151|cDNA

CTATTCATATGATTTCTCTCCCACAAACTTAACGATGGCGGTTCTCAACTTCACCTTCTGTTGGTCCAAACTCCACTCTCTCCCTATTTCCAAACCCTCTTCTATAACTCTTCAAATCCCCTCTTCTCCACAGGTACAAACCCAATACAAAATCACTCATGATTCTTCCATCAACCTCTCGGAATCCATTTCAAAAGCTTGCATTACAGCTCTAGTCTCTGCTTCGCTGTTCTTCGCTGCTGACCCTGCTCTTGCGTTCA...

CDS

Download CDS FASTA

654 bp · TkA05G434580|TK1151|CDS

ATGGCGGTTCTCAACTTCACCTTCTGTTGGTCCAAACTCCACTCTCTCCCTATTTCCAAACCCTCTTCTATAACTCTTCAAATCCCCTCTTCTCCACAGGTACAAACCCAATACAAAATCACTCATGATTCTTCCATCAACCTCTCGGAATCCATTTCAAAAGCTTGCATTACAGCTCTAGTCTCTGCTTCGCTGTTCTTCGCTGCTGACCCTGCTCTTGCGTTCAAGGGTGGAGGACCTTATGGCTCTGAAGTGACGAG...

Protein

Download Protein FASTA

217 aa · TkA05G434580|TK1151|PROTEIN

MAVLNFTFCWSKLHSLPISKPSSITLQIPSSPQVQTQYKITHDSSINLSESISKACITALVSASLFFAADPALAFKGGGPYGSEVTRGQDLSGKDFSGRTLIKQDFKTSILRQANFKGAKLLGASFFDSDLTGADLTDADLRGADFSLANVTKANLTNANLEGALVTGNTSFKGSIITGADFTDVPLREDQKEYLCKIADGVNPTTGNDTRETLFCK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G434580`
TK1151 ID	TkA05G434580
OH-1004 ID	LXL04_021916
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 70.684 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G434580

Location Chr05:108505368-108506904 (+)

Description Similar to At2g44920: Thylakoid lumenal 15 kDa protein 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44920`	Thylakoid lumenal 15 kDa protein 1, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021916 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0051260 protein homooligomerization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0031977 thylakoid lumen Cellular Component

KEGG gene cross-reference

ath:AT1G12250

ath:AT2G44920

ath:AT5G55000

cyt:cce_1272

syn:slr1819

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982

Rank 1 · TkA05G434580 · TK1151

Mitochondrion0.021

Rank 2 · TkA05G434580 · TK1151

Nucleus0.009

Rank 3 · TkA05G434580 · TK1151

Cytoplasm0.008

Rank 4 · TkA05G434580 · TK1151

Cell membrane0.008

Rank 5 · TkA05G434580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00805Pentapeptide87-98 aa

PF25296Decapeptide97-164 aa

PF13599Pentapeptide_4106-181 aa

PF00805Pentapeptide109-147 aa

PF13576Pentapeptide_3111-147 aa

PF00805Pentapeptide129-167 aa

PF00805Pentapeptide150-184 aa

PF13576Pentapeptide_3153-185 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G434580	`PF00805`	Pentapeptide	87	98	4e-22	78.1
TkA05G434580	`PF25296`	Decapeptide	97	164	3.3e-05	24.4
TkA05G434580	`PF13599`	Pentapeptide_4	106	181	1.6e-08	35.2
TkA05G434580	`PF00805`	Pentapeptide	109	147	4e-22	78.1
TkA05G434580	`PF13576`	Pentapeptide_3	111	147	2.5e-11	44.3
TkA05G434580	`PF00805`	Pentapeptide	129	167	4e-22	78.1
TkA05G434580	`PF00805`	Pentapeptide	150	184	4e-22	78.1
TkA05G434580	`PF13576`	Pentapeptide_3	153	185	2.5e-11	44.3
TkA05G434580	`PF13599`	Pentapeptide_4	170	187	1.6e-08	35.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22160`	Arabidopsis thaliana	sp\|O22160\|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic	77.100%	Swiss-Prot	High

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