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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G416030
Reference: TK1151 Chr: Chr05 Coordinates: 103524206-103528248 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1663 bp · TkA05G416030|TK1151|cDNA

CTATACCCCAAGATATTTTTATCCTCATCGGTATCATCTCTTTTCTGCAGATTAGGGTTTTGCTGTTTCGCCATCTGAAGGTAAAATGAGGCCCATTTTCTGTGGGAATTTTGAATTTGATGCACGACAGGGTGAACTTGAGAGACTCTTCAGAAAATATGGAAAAGTTGATCGAGTGGATATGAAGTCTGGATTTCTCCAAACTACCCTTGGCTGATGGATGATCATTCACATTACCACATTCCATTTCCAGGCCATGT...

CDS

Download CDS FASTA

1089 bp · TkA05G416030|TK1151|CDS

ATGAGGCCCATTTTCTGTGGGAATTTTGAATTTGATGCACGACAGGGTGAACTTGAGAGACTCTTCAGAAAATATGGAAAAGTTGATCGAGTGGATATGAAGTCTGGGTTTGCTTTTGTCTATATGGAGGATGAAAGAGATGCTGAAGATGCTATTCGTGCACTTGACCGCTATGAATTTGGTAGGAAGGGACGCCGACTTCGTGTTGAGTGGACAAAGCAAGAACGCAGTGTGAGACAACCCGCAAGTTCTAGAAGATC...

Protein

Download Protein FASTA

362 aa · TkA05G416030|TK1151|PROTEIN

MRPIFCGNFEFDARQGELERLFRKYGKVDRVDMKSGFAFVYMEDERDAEDAIRALDRYEFGRKGRRLRVEWTKQERSVRQPASSRRSSSNSRPSKTLFVINFDPYNTRTRDLERHFDPYGKILNIRIRRNFAFIQFELQEDATKALEATNMSKIMDRVISVEYAIKDDDDRRSGGSPGGGRDRSPRRRSGDDRRSPSPYRRERGSPDYGRARDRASPDYGRGRGRSPSPHRRDRGSPDYTRGASPSPGLNGGGTRRDGTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G416030
TK1151 IDTkA05G416030
OH-1004 IDLXL04_018887
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)48.600
Protein coverage (%)TK1151 19.061 / OH-1004 22.785
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G416030
LocationChr05:103524206-103528248 (-)
DescriptionSimilar to SR34: Serine/arginine-rich-splicing factor SR34
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g52040 Required for constitutive and alternative pre-mRNA splicing (Probable).
A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003875
The RNA-binding protein HOS5 and serine/arginine-rich proteins RS40 and RS41 participate in miRNA biogenesis in Arabidopsis.2015 · DOI: 10.1093/nar/gkv751
At4g25500 Required for constitutive and alternative pre-mRNA splicing (Probable).
A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003875
The RNA-binding protein HOS5 and serine/arginine-rich proteins RS40 and RS41 participate in miRNA biogenesis in Arabidopsis.2015 · DOI: 10.1093/nar/gkv751
At3g61860 Required for constitutive and alternative pre-mRNA splicing. No verified direct reference in this release
At2g46610 Probably involved in intron recognition and spliceosome assembly. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018887 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0005634 nucleus Cellular Component
GO:0005681 spliceosomal complex Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0035061 interchromatin granule Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G02840
ath:AT1G09140
ath:AT3G49430
ath:AT4G02430
gga:772264
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.972
Rank 1 · TkA05G416030 · TK1151
Cytoplasm0.150
Rank 2 · TkA05G416030 · TK1151
Cell membrane0.014
Rank 3 · TkA05G416030 · TK1151
Extracellular0.009
Rank 4 · TkA05G416030 · TK1151
Mitochondrion0.008
Rank 5 · TkA05G416030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076RRM_14-62 aa
PF08675RNA_bind12-55 aa
PF11767SET_assoc17-60 aa
PF28976RRM_ACIN117-69 aa
PF13893RRM_518-85 aa
PF09902DUF212920-61 aa
PF16842RRM_occluded21-69 aa
PF14605Nup35_RRM_222-51 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G416030PF00076RRM_14622e-30105.1
TkA05G416030PF08675RNA_bind12550.0002721.6
TkA05G416030PF11767SET_assoc17600.0713.5
TkA05G416030PF28976RRM_ACIN117690.2112.4
TkA05G416030PF13893RRM_518850.0006820.0
TkA05G416030PF09902DUF212920610.08313.7
TkA05G416030PF16842RRM_occluded21690.02715.0
TkA05G416030PF14605Nup35_RRM_222514e-0524.1
TkA05G416030PF03880DbpA27700.0006120.6
TkA05G416030PF29326RRM_MUD2_C28610.09213.5
TkA05G416030PF13893RRM_5891610.0006820.0
TkA05G416030PF00076RRM_1971592e-30105.1
TkA05G416030PF08675RNA_bind971540.0002721.6
TkA05G416030PF11767SET_assoc1071590.0713.5
TkA05G416030PF14605Nup35_RRM_21141464e-0524.1
TkA05G416030PF09902DUF21291141350.08313.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P92966Arabidopsis thalianasp|P92966|SRS41_ARATH Serine/arginine-rich splicing factor RS4169.200%Swiss-ProtMedium
P92965Arabidopsis thalianasp|P92965|RS40_ARATH Serine/arginine-rich splicing factor RS4068.400%Swiss-ProtMedium
P92964Arabidopsis thalianasp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS3167.700%Swiss-ProtLow
Q9ZPX8Arabidopsis thalianasp|Q9ZPX8|RS31A_ARATH Serine/arginine-rich splicing factor RS31A61.100%Swiss-ProtLow

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