TkA05G399280 | RubberDandelionOmics

Gene overview

TkA05G399280

Reference: TK1151 Chr: Chr05 Coordinates: 99304489-99307803 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2260 bp · TkA05G399280|TK1151|cDNA

CAAAAACCAAAATGCTATATGAGGTTAGTTCAAAATGTATACGTCTTCAAATGATTAAATGTTCGTTATCCAGAAATAGGTGAGGCGTGTGAATTAGAAAAAAAGCTAAATTAAAATATAACAACACGATACATTCTTGCAATTAACGGGTAAACTAGTACTAGATTTGGGGATCATCCACAACACGCAAAGTCTTAACTACAAGTCCAAGTCAATCATGATGCGTCATACACAGAAGATGGAAACCTAAAGGGAAAAGA...

CDS

Download CDS FASTA

1467 bp · TkA05G399280|TK1151|CDS

ATGGATCTGAATAAACGGGGATTTGTTGTTTTAGTTATTGGGTTTGTTGTTCTTCTTGAATTATGTTTGTTGGCATCAGGCAATGTGGTTTTCCAGGTTCAGCATAAGTTTGCTGGTAACAAAAGGTCATTGACTCAATTCAAAGCTCATGATTCCGACCGTCATCGGAGGATTCTCTCAGCCGTTGACCTTCCCATTGGCGGCGACGGCAGCCCCACTTCAGCAGCGCTCTATTTCACTAAAATTCAAATTGGAACTCC...

Protein

Download Protein FASTA

488 aa · TkA05G399280|TK1151|PROTEIN

MDLNKRGFVVLVIGFVVLLELCLLASGNVVFQVQHKFAGNKRSLTQFKAHDSDRHRRILSAVDLPIGGDGSPTSAALYFTKIQIGTPPKDYHVQVDTGSDLLWVNCAGCQKCPKKSDLGISLALYNPQASSTAKMVNCDQDICITTLSDPNIDCKAGMYCSYQVTYGDGSSTMGYFVKDVIRLDKASGNLQTTFMNGSIAFGCGSQQSGELGSSEQALDGILGFGQANSSMLSQLAASKRVKKVFSHCLDGVKGGGIFAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G399280`
TK1151 ID	TkA05G399280
OH-1004 ID	LXL04_021489
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G399280

Location Chr05:99304489-99307803 (+)

Description Similar to At1g65240: Aspartic proteinase-like protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36260`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At1g65240`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At3g18490`	Aspartic protease involved in drought avoidance through abscisic acid signaling.	Overexpression of the aspartic protease ASPG1 gene confers drought avoidance in Arabidopsis.2012 · DOI: 10.1093/jxb/err433
`At3g20015`	Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.	No verified direct reference in this release
`At1g01300`	Aspartyl protease.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021489 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006508 proteolysis Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009555 pollen development Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010019 chloroplast-nucleus signaling pathway Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT1G49050

ath:AT1G65240

ath:AT3G12700

ath:AT5G36260

dosa:Os11g0184800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.487

Rank 1 · TkA05G399280 · TK1151

Extracellular0.165

Rank 2 · TkA05G399280 · TK1151

Lysosome / Vacuole0.164

Rank 3 · TkA05G399280 · TK1151

Cytoplasm0.145

Rank 4 · TkA05G399280 · TK1151

Endoplasmic reticulum0.095

Rank 5 · TkA05G399280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N78-261 aa

PF00026Asp78-139 aa

PF00026Asp162-429 aa

PF14541TAXi_C278-430 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G399280	`PF14543`	TAXi_N	78	261	1.8e-41	143.0
TkA05G399280	`PF00026`	Asp	78	139	2.3e-29	103.6
TkA05G399280	`PF00026`	Asp	162	429	2.3e-29	103.6
TkA05G399280	`PF14541`	TAXi_C	278	430	2.7e-23	83.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q4V3D2`	Arabidopsis thaliana	sp\|Q4V3D2\|ASP36_ARATH Aspartic proteinase 36	49.000%	Swiss-Prot	Medium
`Q9S9K4`	Arabidopsis thaliana	sp\|Q9S9K4\|ASP39_ARATH Aspartic proteinase 39	49.300%	Swiss-Prot	Medium
`Q9LS40`	Arabidopsis thaliana	sp\|Q9LS40\|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1	28.300%	Swiss-Prot	Low
`Q9LHE3`	Arabidopsis thaliana	sp\|Q9LHE3\|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2	29.400%	Swiss-Prot	Low
`Q9LNJ3`	Arabidopsis thaliana	sp\|Q9LNJ3\|APF2_ARATH Aspartyl protease family protein 2	24.000%	Swiss-Prot	Low

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