RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G399070
Reference: TK1151 Chr: Chr05 Coordinates: 99225055-99228309 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2086 bp · TkA05G399070|TK1151|cDNA

CAAACCAACCTACACTTTCCATTTTATTTTTGACAATCTGCCATAAATCTACCCCGTTTTCTGGTAGCTCCCATTAATCAACGTCAACAAAACATGGCATCTGCATCTCCTAATATTTGGGTTTTGCTGGGTTTGAGTTTCGCCATACTGTTGATGGCGAAGAAGCCTAAGCAAGTCGTCAAAGCTGACTTTGGGGCATTCGTGGAGCGGTTTCAATTACTACCTCCGCCGCAGCCGGCTCCTCCGAAAGCCCCTCATCC...

CDS

Download CDS FASTA

1776 bp · TkA05G399070|TK1151|CDS

ATGGCATCTGCATCTCCTAATATTTGGGTTTTGCTGGGTTTGAGTTTCGCCATACTGTTGATGGCGAAGAAGCCTAAGCAAGTCGTCAAAGCTGACTTTGGGGCATTCGTGGAGCGGTTTCAATTACTACCTCCGCCGCAGCCGGCTCCTCCGAAAGCCCCTCATCCACTCACTGGCCTCTCCTTTGCCGTCTCCGACCTATTCGACATCAATGGGTTTGTAACCGGATTCGGCACTCCAGACTGGGAAAGGACACATGA...

Protein

Download Protein FASTA

591 aa · TkA05G399070|TK1151|PROTEIN

MASASPNIWVLLGLSFAILLMAKKPKQVVKADFGAFVERFQLLPPPQPAPPKAPHPLTGLSFAVSDLFDINGFVTGFGTPDWERTHEAASQTSPVVSALVDGGATCVGKRVVDEMSFGISGENRHYDAPTNPVAPSRIPGGSCSGAAVAVAAKLVDFSLGVDTVGGVRQPAAHCGILGFKPSFGSVSHSGIIPVSTSFDTVGWFAMDPSILRRVGQVLLQVPLTIQRNPRNVIIADDCFKLSKIPVDRLTQVVIKSTETL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G399070
TK1151 IDTkA05G399070
OH-1004 IDLXL04_017125
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)46.600
Protein coverage (%)TK1151 99.323 / OH-1004 60.142
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G399070
LocationChr05:99225055-99228309 (+)
DescriptionSimilar to OM64: Outer envelope protein 64, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g17970 Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts.
Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis thaliana.2007 · DOI: 10.1111/j.1365-313x.2007.03207.x
At5g09420 Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria. No verified direct reference in this release
At1g08980 Amidase involved in auxin biosynthesis.
Molecular cloning and characterization of an amidase from Arabidopsis thaliana capable of converting indole-3-acetamide into the plant growth hormone, indole-3-acetic acid.2003 · DOI: 10.1016/s0031-9422(02)00563-0
Characterization of Four Bifunctional Plant IAM/PAM-Amidohydrolases Capable of Contributing to Auxin Biosynthesis.2014 · DOI: 10.3390/plants3030324

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0118100 Amidase involved in auxin biosynthesis (Probable).
Characterization of Four Bifunctional Plant IAM/PAM-Amidohydrolases Capable of Contributing to Auxin Biosynthesis.2014 · DOI: 10.3390/plants3030324
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017125 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006626 protein targeting to mitochondrion Biological Process
GO:0009684 indoleacetic acid biosynthetic process Biological Process
GO:0009851 auxin biosynthetic process Biological Process
GO:0015031 protein transport Biological Process
GO:0030150 protein import into mitochondrial matrix Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005741 mitochondrial outer membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G08980
ath:AT3G17970
ath:AT5G09420
dosa:Os04g0118100
osa:4334958
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.344
Rank 1 · TkA05G399070 · TK1151
Cytoplasm0.273
Rank 2 · TkA05G399070 · TK1151
Peroxisome0.217
Rank 3 · TkA05G399070 · TK1151
Plastid0.126
Rank 4 · TkA05G399070 · TK1151
Nucleus0.106
Rank 5 · TkA05G399070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13414TPR_115-16 aa
PF01425Amidase54-207 aa
PF23606HEAT_ULK4276-337 aa
PF01425Amidase340-440 aa
PF01189Methyltr_RsmB-F340-379 aa
PF25575TPR_BSK1_C442-538 aa
PF29407CFAP70_TPR_C443-538 aa
PF07719TPR_2476-507 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G399070PF13414TPR_115163.3e-0627.4
TkA05G399070PF01425Amidase542074.2e-51175.1
TkA05G399070PF23606HEAT_ULK42763370.02214.9
TkA05G399070PF01425Amidase3404404.2e-51175.1
TkA05G399070PF01189Methyltr_RsmB-F3403790.2211.9
TkA05G399070PF25575TPR_BSK1_C4425384.4e-0627.3
TkA05G399070PF29407CFAP70_TPR_C4435380.2211.7
TkA05G399070PF07719TPR_24765076.4e-1348.4
TkA05G399070PF00515TPR_14795079.4e-1348.1
TkA05G399070PF13432TPR_164815240.113.8
TkA05G399070PF13414TPR_114825233.3e-0627.4
TkA05G399070PF13371TPR_94865390.08113.7
TkA05G399070PF04212MIT4875040.1512.9
TkA05G399070PF13181TPR_84905070.4211.6
TkA05G399070PF13431TPR_174975298.5e-0523.2
TkA05G399070PF07719TPR_25105426.4e-1348.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LVH5Arabidopsis thalianasp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic64.700%Swiss-ProtHigh
F4KCL7Arabidopsis thalianasp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial47.600%Swiss-ProtMedium
Q9FR37Arabidopsis thalianasp|Q9FR37|AMI1_ARATH Amidase 148.900%Swiss-ProtMedium
Q7XTK3Oryza sativa subsp. japonicasp|Q7XTK3|AMI1_ORYSJ Amidase 146.800%Swiss-ProtMedium

JBrowse

View in Genome Browser