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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G358650
Reference: TK1151 Chr: Chr05 Coordinates: 89025067-89027031 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1188 bp · TkA05G358650|TK1151|cDNA

ATGTGGAGAAGAAGAGTTTTCACTTTAGTCCGATACTTCTCTTCTGAACCAGAAACCCCATCTCCTCCTTCCGTTTATTCCTTCCTCCAGCCTTCAATCTTTGAGGTAAGAATACCTCAATCCAAACAAGCTCCCAACTCTAACAATCAAACCCCCAAACCTACAGCCGTAGATAACCAACTTACCCCAATCTCGAATCCACTCTCCAATTATCTCTTCACGAAAATAACACAGACGAAGCTTGGAAGTGCTTCAAGTCT...

CDS

Download CDS FASTA

1188 bp · TkA05G358650|TK1151|CDS

ATGTGGAGAAGAAGAGTTTTCACTTTAGTCCGATACTTCTCTTCTGAACCAGAAACCCCATCTCCTCCTTCCGTTTATTCCTTCCTCCAGCCTTCAATCTTTGAGGTAAGAATACCTCAATCCAAACAAGCTCCCAACTCTAACAATCAAACCCCCAAACCTACAGCCGTAGATAACCAACTTACCCCAATCTCGAATCCACTCTCCAATTATCTCTTCACGAAAATAACACAGACGAAGCTTGGAAGTGCTTCAAGTCT...

Protein

Download Protein FASTA

395 aa · TkA05G358650|TK1151|PROTEIN

MWRRRVFTLVRYFSSEPETPSPPSVYSFLQPSIFEVRIPQSKQAPNSNNQTPKPTAVDNQLTPISNPLSNYLFTKITQTKLGSASSLFHHHHLRYYQVTNGAPAFALVKSMFKNRLSTICFHHNLAKLKESDGKGLNFLEETYIKIAKGYLDQGTIKDLARLILEAQKLESTSIPTIDSIGYDACMSSQDFESAFSLFRDMREARIHELMGSYLTIMTGLTENHRPELMAAFLDEIVDDPRVKIGTHDWNSIIHAFCKAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G358650
TK1151 IDTkA05G358650
OH-1004 IDLXL04_021159
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)52.600
Protein coverage (%)TK1151 95.443 / OH-1004 50.797
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G358650
LocationChr05:89025067-89027031 (+)
DescriptionSimilar to PAP1: Probable inactive purple acid phosphatase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g69290 Pentatricopeptide repeat-containing protein At1g69290. No verified direct reference in this release
At1g68980 Pentatricopeptide repeat-containing protein At1g68980, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021159 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003993 acid phosphatase activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G13750
ath:AT1G68980
ath:AT1G69290
ath:AT4G24890
ath:AT5G50400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.797
Rank 1 · TkA05G358650 · TK1151
Plastid0.110
Rank 2 · TkA05G358650 · TK1151
Nucleus0.069
Rank 3 · TkA05G358650 · TK1151
Cytoplasm0.035
Rank 4 · TkA05G358650 · TK1151
Cell membrane0.010
Rank 5 · TkA05G358650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N40-111 aa
PF25245TPR_At1g68980100-116 aa
PF13041PPR_2104-115 aa
PF13428TPR_14142-168 aa
PF01535PPR183-205 aa
PF23276TPR_24183-224 aa
PF13041PPR_2184-205 aa
PF13812PPR_3184-207 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G358650PF29070MSC6_N401111.1e-0628.7
TkA05G358650PF25245TPR_At1g689801001160.002318.7
TkA05G358650PF13041PPR_21041158.9e-1555.2
TkA05G358650PF13428TPR_141421680.1413.7
TkA05G358650PF01535PPR1832051.1e-1660.5
TkA05G358650PF23276TPR_241832246.3e-0626.9
TkA05G358650PF13041PPR_21842058.9e-1555.2
TkA05G358650PF13812PPR_31842076.9e-0626.8
TkA05G358650PF13428TPR_141842030.1413.7
TkA05G358650PF17177PPR_long1852210.02514.7
TkA05G358650PF12854PPR_11922022.5e-1040.6
TkA05G358650PF25245TPR_At1g689801942050.002318.7
TkA05G358650PF24169Fn3-I_PB42082390.1313.3
TkA05G358650PF01535PPR2122371.1e-1660.5
TkA05G358650PF13041PPR_22122368.9e-1555.2
TkA05G358650PF29070MSC6_N2133051.1e-0628.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C7R4Arabidopsis thalianasp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g6929051.000%Swiss-ProtHigh
Q9CAA5Arabidopsis thalianasp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980, mitochondrial45.200%Swiss-ProtMedium

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