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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G358130
Reference: TK1151 Chr: Chr05 Coordinates: 88871623-88874507 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2390 bp · TkA05G358130|TK1151|cDNA

TTTCGAACAACATCAAAAAGACCCTTCGTATGATCGCACTTTAACGATTCCACCCTCCTCCTCGACAAATCAAAACGAGAACCCTAGCAATACTAATATTCACTACATGACTGCACTCTGATCCGCAAAAACCCTCAAAAATGGCGTCAATGGCGATCTTAACTCGTAAATGGAAACCTCTATCTAAAACCATAAATCCCAAGTTCATCACAACCTACGCCTTTCTCTCACAAGAAGCTCAATTAGCCGAGCAACCACCA...

CDS

Download CDS FASTA

1860 bp · TkA05G358130|TK1151|CDS

ATGGCGTCAATGGCGATCTTAACTCGTAAATGGAAACCTCTATCTAAAACCATAAATCCCAAGTTCATCACAACCTACGCCTTTCTCTCACAAGAAGCTCAATTAGCCGAGCAACCACCATCGCCGCCACGGGTTTCCACCAGTCCACTACCACCGAACCCCGCGACAGGGAGCCCACTATACAATGAGAATTGGCGAAATCCTATCCCGAACATTTCCTCTTCAACCTCCCCCTCTCTTATCCCTCTGGGGTTTTCGCA...

Protein

Download Protein FASTA

619 aa · TkA05G358130|TK1151|PROTEIN

MASMAILTRKWKPLSKTINPKFITTYAFLSQEAQLAEQPPSPPRVSTSPLPPNPATGSPLYNENWRNPIPNISSSTSPSLIPLGFSQQHPSSRIEALSQTLDGDAIMNVFGDWMTSQRWSDIKQLFEFWIRSLDNNGKPNKPDVSLYNHYLRANLMMGASAGELLDFVAQMEDYKISPNTASFNLVLKAMYQAKEFDAAVNLIDRMIQTGTESKTALPDDESYHLVVRLLLSRNQIDTALKYIDLTLKSGYMLSVEVFTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G358130
TK1151 IDTkA05G358130
OH-1004 IDLXL04_021152
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G358130
LocationChr05:88871623-88874507 (+)
DescriptionSimilar to At1g26460: Pentatricopeptide repeat-containing protein At1g26460, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g26460 Pentatricopeptide repeat-containing protein At1g26460, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021152 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006413 translational initiation Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009555 pollen development Biological Process
GO:0010207 photosystem II assembly Biological Process
GO:0032544 plastid translation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008494 translation activator activity Molecular Function
KEGG gene cross-reference
ath:AT1G09900
ath:AT1G26460
ath:AT3G06920
ath:AT3G46610
ath:AT5G41170
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.832
Rank 1 · TkA05G358130 · TK1151
Plastid0.117
Rank 2 · TkA05G358130 · TK1151
Nucleus0.050
Rank 3 · TkA05G358130 · TK1151
Cytoplasm0.047
Rank 4 · TkA05G358130 · TK1151
Cell membrane0.013
Rank 5 · TkA05G358130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27432YdfE_C92-132 aa
PF13812PPR_3141-190 aa
PF12854PPR_1141-148 aa
PF13041PPR_2142-190 aa
PF10037MRP-S27163-208 aa
PF17177PPR_long165-210 aa
PF13762MNE1168-270 aa
PF23276TPR_24171-276 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G358130PF27432YdfE_C921320.2712.4
TkA05G358130PF13812PPR_31411902e-1660.5
TkA05G358130PF12854PPR_11411486.5e-0832.9
TkA05G358130PF13041PPR_21421902.7e-2382.5
TkA05G358130PF10037MRP-S271632080.007416.0
TkA05G358130PF17177PPR_long1652101.1e-1145.3
TkA05G358130PF13762MNE11682700.01216.3
TkA05G358130PF23276TPR_241712763.6e-1763.2
TkA05G358130PF12921ATP131732087.6e-0523.3
TkA05G358130PF29070MSC6_N1742434e-1453.2
TkA05G358130PF12854PPR_11762066.5e-0832.9
TkA05G358130PF13041PPR_21782122.7e-2382.5
TkA05G358130PF01535PPR1822081.9e-1350.4
TkA05G358130PF13428TPR_141872150.0001922.5
TkA05G358130PF10037MRP-S272092470.007416.0
TkA05G358130PF12921ATP132142457.6e-0523.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FZD1Arabidopsis thalianasp|Q9FZD1|PPR58_ARATH Pentatricopeptide repeat-containing protein At1g26460, mitochondrial59.400%Swiss-ProtHigh

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