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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G350470
Reference: TK1151 Chr: Chr05 Coordinates: 86818872-86820731 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1860 bp · TkA05G350470|TK1151|cDNA

ATGGAAAATATCATTACAGGTTCACCTTCATCTTATTCCATCCCACTTACCCATGACACCGATTCCAGAAAGTCATCACTTATTGGCAAGCTTGAATCTTGTAATTCCTTAAAACAGCTCAAACAAATCCATTCCTATATCATCAAAACATCTCCAACATTACCACACCAAACCCAACAATTGGTTTACACCACAATCATCTCTATCTCTTCTAGAGCACCAAAACACGCTCCTGATATCACATACATACACTCTCTTCT...

CDS

Download CDS FASTA

1860 bp · TkA05G350470|TK1151|CDS

ATGGAAAATATCATTACAGGTTCACCTTCATCTTATTCCATCCCACTTACCCATGACACCGATTCCAGAAAGTCATCACTTATTGGCAAGCTTGAATCTTGTAATTCCTTAAAACAGCTCAAACAAATCCATTCCTATATCATCAAAACATCTCCAACATTACCACACCAAACCCAACAATTGGTTTACACCACAATCATCTCTATCTCTTCTAGAGCACCAAAACACGCTCCTGATATCACATACATACACTCTCTTCT...

Protein

Download Protein FASTA

619 aa · TkA05G350470|TK1151|PROTEIN

MENIITGSPSSYSIPLTHDTDSRKSSLIGKLESCNSLKQLKQIHSYIIKTSPTLPHQTQQLVYTTIISISSRAPKHAPDITYIHSLLNKLDNPTIDLYNTVIKSFTQSTHNSLFAILFYSDLLVKGLIGDSFTYPYLLKACTVSRALREGEQIHSHVVKTAFVLNLYVANTLIGFYGVCRDMKIAQKVFDESPERDLVTWTTLIQGYVQSGSLKKGVEVFYEMCEAGIKPDEITMVVVISACAKLRDLNLGTKLHTYIYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G350470
TK1151 IDTkA05G350470
OH-1004 IDLXL04_021074
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)77.200
Protein coverage (%)TK1151 99.192 / OH-1004 73.596
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G350470
LocationChr05:86818872-86820731 (+)
DescriptionSimilar to PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At3g15930 Putative pentatricopeptide repeat-containing protein At3g15930. No verified direct reference in this release
At1g50270 Pentatricopeptide repeat-containing protein At1g50270. No verified direct reference in this release
At4g38010 Pentatricopeptide repeat-containing protein At4g38010. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021074 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0016554 cytidine to uridine editing Biological Process
GO:0016556 mRNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G59720
ath:AT2G02980
ath:AT4G21065
ath:AT5G48910
ath:AT5G66520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.678
Rank 1 · TkA05G350470 · TK1151
Plastid0.165
Rank 2 · TkA05G350470 · TK1151
Nucleus0.039
Rank 3 · TkA05G350470 · TK1151
Cytoplasm0.027
Rank 4 · TkA05G350470 · TK1151
Cell membrane0.005
Rank 5 · TkA05G350470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N23-109 aa
PF12854PPR_163-68 aa
PF23276TPR_2478-106 aa
PF22330Rib_mS39_PPR81-104 aa
PF13812PPR_392-105 aa
PF13041PPR_293-141 aa
PF12854PPR_193-105 aa
PF01535PPR98-107 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G350470PF29070MSC6_N231091.5e-1454.6
TkA05G350470PF12854PPR_163683.9e-2278.4
TkA05G350470PF23276TPR_24781061.2e-1455.0
TkA05G350470PF22330Rib_mS39_PPR811040.0002721.5
TkA05G350470PF13812PPR_3921051.4e-34118.6
TkA05G350470PF13041PPR_2931411.1e-55186.2
TkA05G350470PF12854PPR_1931053.9e-2278.4
TkA05G350470PF01535PPR981076.3e-45149.0
TkA05G350470PF28771RMD9_mid1021120.008516.6
TkA05G350470PF13812PPR_31261761.4e-34118.6
TkA05G350470PF10602RPN71361760.01815.5
TkA05G350470PF28771RMD9_mid1391970.008516.6
TkA05G350470PF06239ECSIT_N1552390.02814.4
TkA05G350470PF13812PPR_31571911.4e-34118.6
TkA05G350470PF13041PPR_21671911.1e-55186.2
TkA05G350470PF01535PPR1701956.3e-45149.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic34.700%Swiss-ProtMedium
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial37.900%Swiss-ProtMedium
Q9LSB8Arabidopsis thalianasp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g1593037.000%Swiss-ProtMedium
Q9SX45Arabidopsis thalianasp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g5027038.700%Swiss-ProtMedium
Q9SZK1Arabidopsis thalianasp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g3801036.900%Swiss-ProtMedium

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