TkA05G347330 | RubberDandelionOmics

Gene overview

TkA05G347330

Reference: TK1151 Chr: Chr05 Coordinates: 86048326-86049198 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

813 bp · TkA05G347330|TK1151|cDNA

ATGGATGTCGCTGAATCTATCACAGACGGCGATACGTTAACGTCATCTGGAAGAATCTTCAAAATGGGATTTTTCAGCCCAGGGATTCCACGAATCGGTACTTTCCAATTACTACAAAATCAGGTGTACTTCAATTTCAACACGTTAGTAATAGCAATTATAATCGTACCGAAACTCTCATCATCGTCGACGGAATTCAATCATCCAGTTTTACAGCTCTTAGACATCGGCTATCTAGTCATACGAGATGAAAACGATAA...

CDS

Download CDS FASTA

813 bp · TkA05G347330|TK1151|CDS

ATGGATGTCGCTGAATCTATCACAGACGGCGATACGTTAACGTCATCTGGAAGAATCTTCAAAATGGGATTTTTCAGCCCAGGGATTCCACGAATCGGTACTTTCCAATTACTACAAAATCAGGTGTACTTCAATTTCAACACGTTAGTAATAGCAATTATAATCGTACCGAAACTCTCATCATCGTCGACGGAATTCAATCATCCAGTTTTACAGCTCTTAGACATCGGCTATCTAGTCATACGAGATGAAAACGATAA...

Protein

Download Protein FASTA

270 aa · TkA05G347330|TK1151|PROTEIN

MDVAESITDGDTLTSSGRIFKMGFFSPGIPRIGTFQLLQNQVYFNFNTLVIAIIIVPKLSSSSTEFNHPVLQLLDIGYLVIRDENDKNPENFHWQSFDYPVDTLLPGMKLEKKKNFNTGFETYLSSWKTSDDPSPGDYTYRFDYTGYPQLIMRKNSAISFRLGSWNGLGFSGIPFSKPPINASYKITVVFNEAEQPNRTILNRSRTAEPDHIEPKPNSRTEPYQTEVGPPNQTISNRSRTAEPNHIKPKPDRRTRPYRTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G347330`
TK1151 ID	TkA05G347330
OH-1004 ID	LXL04_003149
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	80.600
Protein coverage (%)	TK1151 49.630 / OH-1004 38.068 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G347330

Location Chr05:86048326-86049198 (-)

Description Similar to SLSG: S-locus-specific glycoprotein S13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21380`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release
`At4g27300`	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1.	No verified direct reference in this release
`At1g65800`	Involved in the regulation of cellular expansion and differentiation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003149 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0060320 rejection of self pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT4G21380

ath:AT4G27290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.395

Rank 1 · TkA05G347330 · TK1151

Cell membrane0.292

Rank 2 · TkA05G347330 · TK1151

Endoplasmic reticulum0.134

Rank 3 · TkA05G347330 · TK1151

Cytoplasm0.129

Rank 4 · TkA05G347330 · TK1151

Lysosome / Vacuole0.045

Rank 5 · TkA05G347330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453B_lectin60-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G347330	`PF01453`	B_lectin	60	128	1.5e-16	61.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81905`	Arabidopsis thaliana	sp\|O81905\|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8	33.000%	Swiss-Prot	Medium
`O81833`	Arabidopsis thaliana	sp\|O81833\|SD11_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	38.900%	Swiss-Prot	Medium
`Q9S972`	Arabidopsis thaliana	sp\|Q9S972\|SD16_ARATH Receptor-like serine/threonine-protein kinase SD1-6	34.700%	Swiss-Prot	Medium

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