TkA05G328580 | RubberDandelionOmics

Gene overview

TkA05G328580

Reference: TK1151 Chr: Chr05 Coordinates: 80921605-80925239 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3247 bp · TkA05G328580|TK1151|cDNA

AAGCAACCGGAACTTGGGAGGCCTAAATGTAAATATATAATCCCTAAGCTCAACTCGTACTAGTCTACTCTTCCGAGACTGTCTGCTCCCAAAACCTATCATTTCGATCTCCAAATATCCCTAGTATGATCACACCACCGATCGAAGCACCATGAAATCCATTGTAGTTCTTCATCATTTTCTCTGTCTCCTTCTCCTGTTTTCACATCTAAAATCCGTTTCTTCATGGAAAAAAGAAGAATTCAGAAACTGTGATCAAA...

CDS

Download CDS FASTA

2793 bp · TkA05G328580|TK1151|CDS

ATGAAATCCATTGTAGTTCTTCATCATTTTCTCTGTCTCCTTCTCCTGTTTTCACATCTAAAATCCGTTTCTTCATGGAAAAAAGAAGAATTCAGAAACTGTGATCAAACCCCTTTCTGCAAAAGAGCTAGATCAAGAAAACCCCAACACTGTAAAGTCATTGCCACCGATGTAGCAATCGCAAATGGAGATCTAACTGCCAAACTCATAACCCCTAAGAATTTTAAAGAAAACGCAGAGGAAGATTCATCAGAAATCGC...

Protein

Download Protein FASTA

930 aa · TkA05G328580|TK1151|PROTEIN

MKSIVVLHHFLCLLLLFSHLKSVSSWKKEEFRNCDQTPFCKRARSRKPQHCKVIATDVAIANGDLTAKLITPKNFKENAEEDSSEIASKPLILSLSVYQNGILRLKIDEDPSQNPPKKRFEVPDVVLPEFESKKLWLQRHTKEVIKGDSADSFVVYLFDGYEAVLRSDPLEIFVREQGSGNRVLSFNSHGLFDFEQLRVKKEGDDWEERFRSHTDSRPYGPQSISFDISFHGADFVYGIPEHATTLSLKPTNGPGVEQSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G328580`
TK1151 ID	TkA05G328580
OH-1004 ID	LXL04_003393
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G328580

Location Chr05:80921605-80925239 (+)

Description Similar to PSL5: Probable glucan 1,3-alpha-glucosidase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63840`	Cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins (By similarity).	The cellulose-deficient Arabidopsis mutant rsw3 is defective in a gene encoding a putative glucosidase II, an enzyme processing N-glycans during ER quality control.2002 · DOI: 10.1046/j.1365-313x.2002.01483.x Uncoupling of sustained MAMP receptor signaling from early outputs in an Arabidopsis endoplasmic reticulum glucosidase II allele.2009 · DOI: 10.1073/pnas.0907711106

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0216600`	Cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003393 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000272 polysaccharide catabolic process Biological Process

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006491 N-glycan processing Biological Process

GO:0006952 defense response Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0043687 post-translational protein modification Biological Process

GO:0050829 defense response to Gram-negative bacterium Biological Process

GO:0050830 defense response to Gram-positive bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT5G63840

ddi:DDB_G0269154

dosa:Os03g0216600

mmu:14376

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.749

Rank 1 · TkA05G328580 · TK1151

Cytoplasm0.131

Rank 2 · TkA05G328580 · TK1151

Lysosome / Vacuole0.096

Rank 3 · TkA05G328580 · TK1151

Golgi apparatus0.087

Rank 4 · TkA05G328580 · TK1151

Extracellular0.052

Rank 5 · TkA05G328580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13802Gal_mutarotas_293-310 aa

PF21365Glyco_hydro_31_3rd124-149 aa

PF01055Glyco_hydro_31_2nd367-694 aa

PF21365Glyco_hydro_31_3rd583-608 aa

PF21365Glyco_hydro_31_3rd702-788 aa

PF17137DUF5110807-849 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G328580	`PF13802`	Gal_mutarotas_2	93	310	2e-39	136.5
TkA05G328580	`PF21365`	Glyco_hydro_31_3rd	124	149	8.5e-27	94.2
TkA05G328580	`PF01055`	Glyco_hydro_31_2nd	367	694	5.3e-122	407.9
TkA05G328580	`PF21365`	Glyco_hydro_31_3rd	583	608	8.5e-27	94.2
TkA05G328580	`PF21365`	Glyco_hydro_31_3rd	702	788	8.5e-27	94.2
TkA05G328580	`PF17137`	DUF5110	807	849	3.6e-05	24.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN05`	Arabidopsis thaliana	sp\|Q9FN05\|PSL5_ARATH Probable glucan 1,3-alpha-glucosidase	75.200%	Swiss-Prot	High
`B9F676`	Oryza sativa subsp. japonica	sp\|B9F676\|GLU2A_ORYSJ Probable glucan 1,3-alpha-glucosidase	66.200%	Swiss-Prot	High

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