TkA05G296410 | RubberDandelionOmics

Gene overview

TkA05G296410

Reference: TK1151 Chr: Chr05 Coordinates: 73110642-73114973 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2363 bp · TkA05G296410|TK1151|cDNA

TTTCCCTCCTATTCCCCCATTTTGGCCAGCGAGAAAAACAAGAGGGTTCCGAATTCAGGTATCCCATCGCCAGCGGCTACCAACTACTCATCTCCGCCACTGACGGCCGAGTTCTACCGTAGAGAAGGTATGTCGACACAAAAAAGAGACAGAAAGAACCTATTAGCTGTCACCGGAGCTGCTGCCTTCGTAGCCGTGGCCGTCAAGTTCGCTATCGATGCTATTAACTCAAAGAGAAGCGATCTCAAGAAGAAAGGTCT...

CDS

Download CDS FASTA

2235 bp · TkA05G296410|TK1151|CDS

TTTCCCTCCTATTCCCCCATTTTGGCCAGCGAGAAAAACAAGAGGGTTCCGAATTCAGGTATCCCATCGCCAGCGGCTACCAACTACTCATCTCCGCCACTGACGGCCGAGTTCTACCGTAGAGAAGGTATGTCGACACAAAAAAGAGACAGAAAGAACCTATTAGCTGTCACCGGAGCTGCTGCCTTCGTAGCCGTGGCCGTCAAGTTCGCTATCGATGCTATTAACTCAAAGAGAAGCGATCTCAAGAAGAAAGGTCT...

Protein

Download Protein FASTA

744 aa · TkA05G296410|TK1151|PROTEIN

FPSYSPILASEKNKRVPNSGIPSPAATNYSSPPLTAEFYRREGMSTQKRDRKNLLAVTGAAAFVAVAVKFAIDAINSKRSDLKKKGLRGSNVRASLSASEILRLADRLIASSKAVHDAVASVPLDKVTYTNVVLPLEELEAYQFPLVQSCVFPKFVSTSEETRKASTEAERRIDAHVSTCSQREDVYRAIKAFAAKGEYKTMELKRYTQFLIKDFERNGMNLTLTKREELQRLRTQIDELSFQYIKNLNDDNSFLLFDHQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G296410`
TK1151 ID	TkA05G296410
OH-1004 ID	LXL04_021717
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	24.900
Protein coverage (%)	TK1151 83.333 / OH-1004 88.652 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G296410

Location Chr05:73110642-73114973 (+)

Description Similar to OCT1: Mitochondrial intermediate peptidase, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67690`	Involved in cytoplasmic peptide degradation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021717 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006518 peptide metabolic process Biological Process

GO:0006627 protein processing involved in protein targeting to mitochondrion Biological Process

GO:0016485 protein processing Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0004175 endopeptidase activity Molecular Function

GO:0004177 aminopeptidase activity Molecular Function

GO:0004222 metalloendopeptidase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT5G51540

hsa:4285

mmu:70478

pon:100171586

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.359

Rank 1 · TkA05G296410 · TK1151

Mitochondrion0.229

Rank 2 · TkA05G296410 · TK1151

Peroxisome0.189

Rank 3 · TkA05G296410 · TK1151

Plastid0.143

Rank 4 · TkA05G296410 · TK1151

Nucleus0.124

Rank 5 · TkA05G296410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19310TOP_N126-225 aa

PF05130FlgN215-276 aa

PF01166TSC22222-255 aa

PF01432Peptidase_M3297-734 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G296410	`PF19310`	TOP_N	126	225	0.0036	17.8
TkA05G296410	`PF05130`	FlgN	215	276	0.039	15.1
TkA05G296410	`PF01166`	TSC22	222	255	0.16	12.9
TkA05G296410	`PF01432`	Peptidase_M3	297	734	1e-93	315.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HTQ1`	Arabidopsis thaliana	sp\|F4HTQ1\|MPRO1_ARATH Probable thimet oligopeptidase	58.000%	Swiss-Prot	High

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