TkA05G290140 | RubberDandelionOmics

Gene overview

TkA05G290140

Reference: TK1151 Chr: Chr05 Coordinates: 71705877-71708149 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1474 bp · TkA05G290140|TK1151|cDNA

TTGAAACTGCTGTCACGTTCCCACGGCTTCGGTTCATCCGCCGAAGCTTTAAATACCGATTGCCCCAATCTCATTTCTTATCACTTCTCACACTCATTTCTCTCTACATTATTTCTCTCTCCACTTCATTTCAAACTCTTTTCAATCGCCATGGGATCTGACAAGAAGATTAAGATCGGAATCAACGGATTCGGAAGAATCGGTCGTCTAGTTGCCAGGGTCGCTCTTCAGAGAGATGATGTTGAGCTTGTTGCTGTTAA...

CDS

Download CDS FASTA

1068 bp · TkA05G290140|TK1151|CDS

TTGAAACTGCTGTCACGTTCCCACGGCTTCGGTTCATCCGCCGAAGCTTTAAATACCGATTGCCCCAATCTCATTTCTTATCACTTCTCACACTCATTTCTCTCTACATTATTTCTCTCTCCACTTCATTTCAAACTCTTTTCAATCGCCATGGGATCTGACAAGAAGATTAAGATCGGAATCAACGGATTCGGAAGAATCGGTCGTCTAGTTGCCAGGGTCGCTCTTCAGAGAGATGATGTTGAGCTTGTTGCTGTTAA...

Protein

Download Protein FASTA

355 aa · TkA05G290140|TK1151|PROTEIN

LKLLSRSHGFGSSAEALNTDCPNLISYHFSHSFLSTLFLSPLHFKLFSIAMGSDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGERPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPEYDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G290140`
TK1151 ID	TkA05G290140
OH-1004 ID	LXL04_020686
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.800
Protein coverage (%)	TK1151 91.549 / OH-1004 69.002 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G290140

Location Chr05:71705877-71708149 (+)

Description Similar to GAPC2: Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13440`	Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate.	Cytosolic glyceraldehyde-3-phosphate dehydrogenases interact with phospholipase Dδ to transduce hydrogen peroxide signals in the Arabidopsis response to stress.2012 · DOI: 10.1105/tpc.111.094946
`At3g04120`	Key enzyme in glycolysis that converts D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate.	Characterization of Arabidopsis lines deficient in GAPC-1, a cytosolic NAD-dependent glyceraldehyde-3-phosphate dehydrogenase.2008 · DOI: 10.1104/pp.108.128769 Cytosolic glyceraldehyde-3-phosphate dehydrogenases interact with phospholipase Dδ to transduce hydrogen peroxide signals in the Arabidopsis response to stress.2012 · DOI: 10.1105/tpc.111.094946 Transfer of a Redox-Signal through the Cytosol by Redox-Dependent Microcompartmentation of Glycolytic Enzymes at Mitochondria and Actin Cytoskeleton.2012 · DOI: 10.3389/fpls.2012.00284 Nuclear moonlighting of cytosolic glyceraldehyde-3-phosphate dehydrogenase regulates Arabidopsis response to heat stress.2020 · DOI: 10.1038/s41467-020-17311-4

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020686 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006006 glucose metabolic process Biological Process

GO:0006094 gluconeogenesis Biological Process

GO:0006096 glycolytic process Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009744 response to sucrose Biological Process

GO:0010154 fruit development Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0048316 seed development Biological Process

GO:0051775 response to redox state Biological Process

KEGG gene cross-reference

ath:AT1G13440

ath:AT3G04120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.342

Rank 1 · TkA05G290140 · TK1151

Plastid0.209

Rank 2 · TkA05G290140 · TK1151

Mitochondrion0.174

Rank 3 · TkA05G290140 · TK1151

Peroxisome0.173

Rank 4 · TkA05G290140 · TK1151

Nucleus0.117

Rank 5 · TkA05G290140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02791DDT26-54 aa

PF00044Gp_dh_N57-160 aa

PF01113DapB_N57-88 aa

PF028262-Hacid_dh_C57-87 aa

PF01113DapB_N146-163 aa

PF02800Gp_dh_C206-330 aa

PF01113DapB_N297-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G290140	`PF02791`	DDT	26	54	0.22	12.4
TkA05G290140	`PF00044`	Gp_dh_N	57	160	1.5e-34	119.0
TkA05G290140	`PF01113`	DapB_N	57	88	0.0018	19.1
TkA05G290140	`PF02826`	2-Hacid_dh_C	57	87	0.072	13.2
TkA05G290140	`PF01113`	DapB_N	146	163	0.0018	19.1
TkA05G290140	`PF02800`	Gp_dh_C	206	330	5.1e-54	183.3
TkA05G290140	`PF01113`	DapB_N	297	319	0.0018	19.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FX54`	Arabidopsis thaliana	sp\|Q9FX54\|G3PC2_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic	93.400%	Swiss-Prot	High
`P25858`	Arabidopsis thaliana	sp\|P25858\|G3PC1_ARATH Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic	93.000%	Swiss-Prot	High

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