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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G288160
Reference: TK1151 Chr: Chr05 Coordinates: 71159228-71161601 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1899 bp · TkA05G288160|TK1151|cDNA

AAAAACCACAAAAAAACAGAGAAGAGGCGGTAAAGAGAGGAAACAGGTTACATATAAAAACGCCCATATGATTAATATCACTGCTAGAGGCAGCACTAGCGGCATCTTTCCTCCGATGATGGAAGAAACTGGAGCAACGCAGCTAACACAGTAGTCCCTACAAATTCAGATGTCGTCCCTTTCAACTTCGATTCTCCGGCACCACTGCACGCCGTTTATATCAACCACCGTTCACCGGTGTGCGTCCAGCTTTTGTTCAC...

CDS

Download CDS FASTA

1443 bp · TkA05G288160|TK1151|CDS

ATGTCGTCCCTTTCAACTTCGATTCTCCGGCACCACTGCACGCCGTTTATATCAACCACCGTTCACCGGTGTGCGTCCAGCTTTTGTTCACTCTCTATCACCGCCTCCAGAAACCAAAACCGTGAAAACGTGTCGAGGAAATCTCAGCAGCCGAGCAAGCATCTACTCAAAGCACGCGACACCGTTAAACATTTCTCGTCTCTATCACCGTCTCTCACCTCCACAGATAAGCTCCAGCTCTCTCCGGACCAAGCCATCGG...

Protein

Download Protein FASTA

480 aa · TkA05G288160|TK1151|PROTEIN

MSSLSTSILRHHCTPFISTTVHRCASSFCSLSITASRNQNRENVSRKSQQPSKHLLKARDTVKHFSSLSPSLTSTDKLQLSPDQAIGKVASAQANFMRVVVESAKSPSEEEGIGVELLCVVRNLLKKIKRRVLVGDKVLVGSIDWIDRRGMIENVFQRETEILDPPVANVDHLLVFFSLDQPKLEEFSLTRFLVEAESTQIPVTLALNKTELVEKETVVAWKSKLRSWGYEPIFCSVETKTGLDSLQFNLRDQTTVIVGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G288160
TK1151 IDTkA05G288160
OH-1004 IDLXL04_020657
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G288160
LocationChr05:71159228-71161601 (+)
DescriptionSimilar to rsgA: Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g67440 One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. No verified direct reference in this release
At1g67460 Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020657 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000028 ribosomal small subunit assembly Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0042274 ribosomal small subunit biogenesis Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0019843 rRNA binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ana:alr2449
ath:AT1G67440
ath:AT1G67460
ava:Ava_0381
mar:MAE_49420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.853
Rank 1 · TkA05G288160 · TK1151
Mitochondrion0.103
Rank 2 · TkA05G288160 · TK1151
Nucleus0.083
Rank 3 · TkA05G288160 · TK1151
Cytoplasm0.039
Rank 4 · TkA05G288160 · TK1151
Peroxisome0.013
Rank 5 · TkA05G288160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13671AAA_3328-62 aa
PF13514AAA_2738-77 aa
PF13191AAA_1696-96 aa
PF15874Il2rg118-159 aa
PF01926MMR_HSR1143-209 aa
PF03193RsgA_GTPase156-340 aa
PF00071Ras191-224 aa
PF02421FeoB_N193-247 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G288160PF13671AAA_3328621.69.7
TkA05G288160PF13514AAA_2738770.211.9
TkA05G288160PF13191AAA_1696960.003618.6
TkA05G288160PF15874Il2rg1181590.2212.6
TkA05G288160PF01926MMR_HSR11432098.4e-0523.4
TkA05G288160PF03193RsgA_GTPase1563409.3e-50169.6
TkA05G288160PF00071Ras1912240.1112.7
TkA05G288160PF02421FeoB_N1932470.2311.7
TkA05G288160PF13555AAA_292422720.0001222.5
TkA05G288160PF02456Adeno_IVa22422750.03313.7
TkA05G288160PF01695IstB_IS212432720.2311.7
TkA05G288160PF13175AAA_152452730.01715.4
TkA05G288160PF13514AAA_272452800.211.9
TkA05G288160PF13476AAA_232462982.8e-0525.6
TkA05G288160PF20703nSTAND12462710.001219.3
TkA05G288160PF02463SMC_N2462730.007516.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q4V399Arabidopsis thalianasp|Q4V399|RSGA1_ARATH Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial63.600%Swiss-ProtHigh
F4HTL8Arabidopsis thalianasp|F4HTL8|RSGA2_ARATH Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial63.300%Swiss-ProtLow

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