Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1724 bp · TkA05G282200|TK1151|cDNA
GAAAATAAAATTGCGAAAGATTATGGTGATAACACGTGTCCTATACGTACTCTTTTATCAGTAGTAGATTATATGCAAGAAATGCTAAATGACAAAAACATAAAAGAGTACTATATATCGTAGCCAAGCGATATTCAATATCATTCAATTTTGACCTACAATTCATATATAGACATATCTTTGCGAGCCCGTTCACGTAGTTTCTGGAACTATGGATTCAGAAGAGGCTAAGGTCGAGAATGGATCTACAAAATCTAAAT...
1230 bp · TkA05G282200|TK1151|CDS
ATGGATTCAGAAGAGGCTAAGGTCGAGAATGGATCTACAAAATCTAAATTGTTAGACCTTTTGAAGAAAATTTTCGCGGTATATTTGGCATTAGTCACGAGTGTGTTCCAGAAACTCGAAGATTTTCTTGAACTGATTCACGTCTCTGTACATGACAAGGTTGACAACTATGCTCCGTCTCCGGTCAAGAACCTTCATGACAAATTCGATTCTCATTCCCGGGAAGCCGTTAAAAAAACAAAGTCGTTGTTCGTGGGTGG...
Protein
Download Protein FASTA409 aa · TkA05G282200|TK1151|PROTEIN
MDSEEAKVENGSTKSKLLDLLKKIFAVYLALVTSVFQKLEDFLELIHVSVHDKVDNYAPSPVKNLHDKFDSHSREAVKKTKSLFVGGIPVLGNVVGGITNSIANPKDVANKMIDRTTSLVMDNPVAQAVNSAAEKMMQEAQSAGKKAALKSVYASITLLLLPLIAELWYKANTKEWFSKLAEVILPLIEKFCKWYNDTVDKMEEKGYSFFGYLPTMPILEMETAYKLVKTKNDGIEALEDAGEVASGIVGNIPIVGGLAQ...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G282200 |
|---|---|
| TK1151 ID | TkA05G282200 |
| OH-1004 ID | LXL04_020647 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G282200 |
|---|---|
| Location | Chr05:69767527-69769511 (+) |
| Description | Similar to At1g67360: REF/SRPP-like protein At1g67360 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0009555 pollen development Biological Process GO:0034389 lipid droplet organization Biological Process GO:0045927 positive regulation of growth Biological Process GO:0071456 cellular response to hypoxia Biological Process GO:0080186 developmental vegetative growth Biological Process GO:1902584 positive regulation of response to water deprivation Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005811 lipid droplet Cellular Component |
| KEGG gene cross-reference | ath:AT1G67360 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF10653Phage-A118_gp4529-45 aaPF17316Perilipin_232-82 aaPF07855ATG10143-76 aaPF06046Sec646-208 aaPF05755REF50-83 aaPF04888SseC90-149 aaPF12331Rad26-like_helical_rpts91-136 aaPF23706Rv189391-123 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G282200 | PF10653 | Phage-A118_gp45 | 29 | 45 | 0.6 | 10.9 |
| TkA05G282200 | PF17316 | Perilipin_2 | 32 | 82 | 0.069 | 13.3 |
| TkA05G282200 | PF07855 | ATG101 | 43 | 76 | 0.19 | 12.3 |
| TkA05G282200 | PF06046 | Sec6 | 46 | 208 | 0.011 | 15.1 |
| TkA05G282200 | PF05755 | REF | 50 | 83 | 2.3e-28 | 100.2 |
| TkA05G282200 | PF04888 | SseC | 90 | 149 | 0.012 | 16.0 |
| TkA05G282200 | PF12331 | Rad26-like_helical_rpts | 91 | 136 | 0.18 | 11.8 |
| TkA05G282200 | PF23706 | Rv1893 | 91 | 123 | 0.28 | 11.8 |
| TkA05G282200 | PF03036 | Perilipin | 93 | 141 | 0.003 | 17.4 |
| TkA05G282200 | PF07855 | ATG101 | 104 | 157 | 0.19 | 12.3 |
| TkA05G282200 | PF17928 | TetR_C_22 | 105 | 134 | 0.001 | 20.1 |
| TkA05G282200 | PF30416 | BcsA_N | 115 | 180 | 0.072 | 14.4 |
| TkA05G282200 | PF22240 | ISP_coupler | 117 | 157 | 0.1 | 13.7 |
| TkA05G282200 | PF17316 | Perilipin_2 | 122 | 204 | 0.069 | 13.3 |
| TkA05G282200 | PF24987 | HEAT_EF3_N | 122 | 156 | 0.2 | 12.4 |
| TkA05G282200 | PF05755 | REF | 124 | 226 | 2.3e-28 | 100.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.