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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G231490
Reference: TK1151 Chr: Chr05 Coordinates: 57899063-57904552 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2633 bp · TkA05G231490|TK1151|cDNA

GAAGACGGGTAACAAGTAACAACCACCACAATGGACCAAAACTCTTATTTACTCTGAAAACCATACGCATCCGGTTACGAAGCGAACACTATCGAGATCTACAAAAACCCAGACTTGATCCAAATATATCGGCTTTGGAAATCAATTGCAGACGAAGAGCATACTGATTGTCTGAGATAGAACTGACTGAAGTGGGTTAGAGATTTTGAGATTTGCATAGGGAGATTGGGTACACGATAAACCCTAGCTATCATTGTATC...

CDS

Download CDS FASTA

2043 bp · TkA05G231490|TK1151|CDS

ATGGAAGCATCTCAAAGCGGATCAGAACGAGAGAAGTCAAAGCCGCCGTCAACTTCTCCACCGATTCCTTCCGTTGCTAATTTCTGGAGAGAGTTTGATTTGGAGAAGGAAAGGAGTATATTAGACGAACAAGGGCTTAGAATTGCTGAAAATCAGGAAAACAGCCAGAAGAACCGCCGGAAACTTGCAGAGAGCACCCGAGATTTCAAAAAAGCTCCAGCTGAAGAAAAGTCCAGCTTGTTCACTTCCTTACTCAGAGG...

Protein

Download Protein FASTA

680 aa · TkA05G231490|TK1151|PROTEIN

MEASQSGSEREKSKPPSTSPPIPSVANFWREFDLEKERSILDEQGLRIAENQENSQKNRRKLAESTRDFKKAPAEEKSSLFTSLLRGYQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPVVASVADKDLKICDLESDNRKMKVELEEFRTEATHLKNQQATIRRLEDRTRQLEQQMEEKVKEIVEMKQRSLAEENQKTLEVLKEREQLLQDQLRHAQDSVSNMQKLHEIAQSKLFEYRAQSEEDGAAKQTEVNLLMDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G231490
TK1151 IDTkA05G231490
OH-1004 IDLXL04_020560
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G231490
LocationChr05:57899063-57904552 (+)
DescriptionSimilar to CASP: Protein CASP
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18480 May be involved in intra-Golgi transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020560 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0000301 retrograde transport, vesicle recycling within Golgi Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006891 intra-Golgi vesicle-mediated transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005802 trans-Golgi network Cellular Component
KEGG gene cross-reference
ath:AT3G18480
hsa:1523
pon:100171552
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.607
Rank 1 · TkA05G231490 · TK1151
Cytoplasm0.402
Rank 2 · TkA05G231490 · TK1151
Endoplasmic reticulum0.133
Rank 3 · TkA05G231490 · TK1151
Nucleus0.092
Rank 4 · TkA05G231490 · TK1151
Cell membrane0.074
Rank 5 · TkA05G231490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25398CUX1_N22-129 aa
PF08172CASP_C33-115 aa
PF25994HH_AprE62-68 aa
PF27954CCDC192121-150 aa
PF30854Par-4_C127-160 aa
PF08172CASP_C135-184 aa
PF27954CCDC192144-244 aa
PF30854Par-4_C155-182 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G231490PF25398CUX1_N221291.9e-40138.1
TkA05G231490PF08172CASP_C331154.8e-60203.7
TkA05G231490PF25994HH_AprE62680.09613.5
TkA05G231490PF27954CCDC1921211504.3e-0523.9
TkA05G231490PF30854Par-4_C1271600.04414.6
TkA05G231490PF08172CASP_C1351844.8e-60203.7
TkA05G231490PF27954CCDC1921442444.3e-0523.9
TkA05G231490PF30854Par-4_C1551820.04414.6
TkA05G231490PF25398CUX1_N1571881.9e-40138.1
TkA05G231490PF25994HH_AprE1622270.09613.5
TkA05G231490PF25398CUX1_N1731951.9e-40138.1
TkA05G231490PF30854Par-4_C1952260.04414.6
TkA05G231490PF08172CASP_C2113114.8e-60203.7
TkA05G231490PF25398CUX1_N2112401.9e-40138.1
TkA05G231490PF25994HH_AprE2483410.09613.5
TkA05G231490PF30854Par-4_C2522930.04414.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LS42Arabidopsis thalianasp|Q9LS42|CASP_ARATH Protein CASP74.500%Swiss-ProtHigh

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