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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G115970
Reference: TK1151 Chr: Chr05 Coordinates: 30939821-30942252 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1263 bp · TkA05G115970|TK1151|cDNA

CTTGCTTATACTCGGTTATTGCTTCACTTATTTCTCTCTGAATTTGCACTGAAATTTCAAAGGAGAGAAATGGCACACCTGCCTCCAAAAGCGCCACAAAACTGGTCGGAAAACTACCACCACCAAAAGCCACCGTCTACCGAGCATTTGCCGTCACCTACAACCGCTGTCGCCACCACCGAAATGGATCCGTCATGGGTGGATGATTTCCTGGACTTCTCATCAACCAAAAGAGGCTCCCACCGCCGATCTGTCAGCGA...

CDS

Download CDS FASTA

918 bp · TkA05G115970|TK1151|CDS

ATGGCACACCTGCCTCCAAAAGCGCCACAAAACTGGTCGGAAAACTACCACCACCAAAAGCCACCGTCTACCGAGCATTTGCCGTCACCTACAACCGCTGTCGCCACCACCGAAATGGATCCGTCATGGGTGGATGATTTCCTGGACTTCTCATCAACCAAAAGAGGCTCCCACCGCCGATCTGTCAGCGACTCCGCCGCCTTCCTCGAGATCCCAATGATGGGTGATGACAACTGCCGGAGATCATCTGCACCAGGGTC...

Protein

Download Protein FASTA

305 aa · TkA05G115970|TK1151|PROTEIN

MAHLPPKAPQNWSENYHHQKPPSTEHLPSPTTAVATTEMDPSWVDDFLDFSSTKRGSHRRSVSDSAAFLEIPMMGDDNCRRSSAPGSRSGNGANGAAAEFDRFDEEQFMSMFIDDENGTAGPTLSCSNPSSPSDHNSMNEQQQIEEEESSWKSETMFNPHAGTTTDNSNDKIFDPKRIKRILANRQSAQRSRVRKLQYISELERSVNSLQAEVSVLSPRVAYLDHQRLVLNVDNSVLKQRIAALSQDKIFKDAHQEALKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G115970
TK1151 IDTkA05G115970
OH-1004 IDLXL04_020000
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G115970
LocationChr05:30939821-30942252 (+)
DescriptionSimilar to BZIP61: Basic leucine zipper 61
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g42380 Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development.
A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026
AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen.2009 · DOI: 10.1007/s11103-009-9493-y
At3g58120 Transcriptional activator.
A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0211800 Transcription regulator. No verified direct reference in this release
Os01g0756200 Transcription regulator. No verified direct reference in this release
Os02g0247100 Transcription regulator. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020000 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009555 pollen development Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT2G42380
ath:AT3G58120
dosa:Os01g0211800
dosa:Os01g0756200
dosa:Os02g0247100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976
Rank 1 · TkA05G115970 · TK1151
Cytoplasm0.089
Rank 2 · TkA05G115970 · TK1151
Cell membrane0.028
Rank 3 · TkA05G115970 · TK1151
Endoplasmic reticulum0.015
Rank 4 · TkA05G115970 · TK1151
Plastid0.010
Rank 5 · TkA05G115970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06005ZapB139-153 aa
PF06156YabA139-153 aa
PF03131bZIP_Maf165-227 aa
PF07716bZIP_2174-221 aa
PF00170bZIP_1176-223 aa
PF28121VPA1267176-219 aa
PF16526CLZ176-191 aa
PF04356DUF489177-272 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G115970PF06005ZapB1391530.3612.0
TkA05G115970PF06156YabA1391531.110.6
TkA05G115970PF03131bZIP_Maf1652271.1e-0526.6
TkA05G115970PF07716bZIP_21742212.8e-0834.4
TkA05G115970PF00170bZIP_11762231.7e-0938.4
TkA05G115970PF28121VPA12671762190.910.4
TkA05G115970PF16526CLZ1761911.89.7
TkA05G115970PF04356DUF4891772720.2212.3
TkA05G115970PF26022CC_Liprin_beta1862460.07714.0
TkA05G115970PF30854Par-4_C1942450.5111.2
TkA05G115970PF06005ZapB1962470.3612.0
TkA05G115970PF06156YabA1982701.110.6
TkA05G115970PF16526CLZ2012461.89.7
TkA05G115970PF03131bZIP_Maf2262651.1e-0526.6
TkA05G115970PF07716bZIP_22282462.8e-0834.4
TkA05G115970PF28121VPA12672342680.910.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IN23Arabidopsis thalianasp|F4IN23|BZP34_ARATH Basic leucine zipper 3452.000%Swiss-ProtHigh
Q9M2K4Arabidopsis thalianasp|Q9M2K4|BZP61_ARATH Basic leucine zipper 6148.500%Swiss-ProtMedium
Q5QNI5Oryza sativa subsp. japonicasp|Q5QNI5|BZP02_ORYSJ Basic leucine zipper 253.800%Swiss-ProtMedium
Q5JMK6Oryza sativa subsp. japonicasp|Q5JMK6|BZP06_ORYSJ Basic leucine zipper 639.600%Swiss-ProtMedium
Q6K3R9Oryza sativa subsp. japonicasp|Q6K3R9|BZP19_ORYSJ Basic leucine zipper 1938.800%Swiss-ProtMedium

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