LXL04_020000 | RubberDandelionOmics

Gene overview

LXL04_020000

Reference: OH-1004 Chr: Chr04 Coordinates: 46985601-46987574 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

918 bp · LXL04_020000|LXL04_020000|OH1004|cDNA

ATGGCACACCTGCCTCCAAAAGCGCCACAAAACTGGTCGGAAAACTACCACCACCAAAAGCCACCGTCTACCGAGCATTTGCCGTCACCTACAACCGCTGTCGCCACCACCGAAATGGATCCGTCATGGGTGGATGATTTCCTGGACTTCTCATCAACCAAAAGAGGCTCCCACCGCCGATCTGTCAGCGACTCTGCCGCCTTCCTCGAGATCCCAATGATGGGTGATGACAACTGCCGGAGATCATCTGCACCAGGGTC...

CDS

Download CDS FASTA

918 bp · LXL04_020000|LXL04_020000|OH1004|CDS

ATGGCACACCTGCCTCCAAAAGCGCCACAAAACTGGTCGGAAAACTACCACCACCAAAAGCCACCGTCTACCGAGCATTTGCCGTCACCTACAACCGCTGTCGCCACCACCGAAATGGATCCGTCATGGGTGGATGATTTCCTGGACTTCTCATCAACCAAAAGAGGCTCCCACCGCCGATCTGTCAGCGACTCTGCCGCCTTCCTCGAGATCCCAATGATGGGTGATGACAACTGCCGGAGATCATCTGCACCAGGGTC...

Protein

Download Protein FASTA

305 aa · LXL04_020000|LXL04_020000|OH1004|PROTEIN

MAHLPPKAPQNWSENYHHQKPPSTEHLPSPTTAVATTEMDPSWVDDFLDFSSTKRGSHRRSVSDSAAFLEIPMMGDDNCRRSSAPGSRSGNGANGAAAEFDRFDEEQFMSMFIDDENGTAGPTLSCSNPSSPSDHNSMNEQQQIEEEENSWKSETMFNPHAGTTTDNSNDKIFDPKRIKRILANRQSAQRSRVRKLQYISELERSVNSLQADVSVLSPRVAYLDHQRLVLNVDNSVLKQRIAALSQDKIFKDAHQEALKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020000`
TK1151 ID	TkA05G115970
OH-1004 ID	LXL04_020000
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_020000

Location Chr04:46985601-46987574 (+)

Description Similar to BZIP61: Basic leucine zipper 61

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g58120`	Transcriptional activator.	A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026
`At2g42380`	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development.	A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026 AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen.2009 · DOI: 10.1007/s11103-009-9493-y

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0756200`	Transcription regulator.	No verified direct reference in this release
`Os01g0211800`	Transcription regulator.	No verified direct reference in this release
`Os02g0247100`	Transcription regulator.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_020000 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009555 pollen development Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT2G42380

ath:AT3G58120

dosa:Os01g0211800

dosa:Os01g0756200

dosa:Os02g0247100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.976

Rank 1 · LXL04_020000 · OH-1004

Cytoplasm0.089

Rank 2 · LXL04_020000 · OH-1004

Cell membrane0.028

Rank 3 · LXL04_020000 · OH-1004

Endoplasmic reticulum0.015

Rank 4 · LXL04_020000 · OH-1004

Plastid0.010

Rank 5 · LXL04_020000 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07716.21bZIP_2174-221 aa

PF00170.27bZIP_1176-220 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020000	`PF07716.21`	bZIP_2	174	221	4.9e-08	33.6
LXL04_020000	`PF00170.27`	bZIP_1	176	220	8.6e-09	36.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2K4`	Arabidopsis thaliana	Basic leucine zipper 61	50.459%	Swiss-Prot	strong database homology
`F4IN23`	Arabidopsis thaliana	Basic leucine zipper 34	49.383%	Swiss-Prot	moderate database homology
`Q5JMK6`	Oryza sativa subsp. japonica	Basic leucine zipper 6	49.306%	Swiss-Prot	moderate database homology
`Q5QNI5`	Oryza sativa subsp. japonica	Basic leucine zipper 2	57.078%	Swiss-Prot	strong database homology
`Q6K3R9`	Oryza sativa subsp. japonica	Basic leucine zipper 19	52.137%	Swiss-Prot	strong database homology

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