RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G082340
Reference: TK1151 Chr: Chr05 Coordinates: 22295234-22303719 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1413 bp · TkA05G082340|TK1151|cDNA

TAAATACACATTGATACTTCTAAAAATAATAAGATATGAAGAATGCAATTAGTGTGGTTCAAATGCAAACACCATTGTTGTCCACCGTGACCACCGGCTCCAGCACCAAAAGACCTGCTTCTTCCCACGCTACTCCACAAAAATTTCACAGACATCACTCTTCAGAAATCAATGGAGCTCTGTGGAGCTTCTGCCTTGGCTTGGAGAACCTCAATTTCTCCTTCTCTCCACTTTTCTCCTCAACCGACTTCGTTGTGCGA...

CDS

Download CDS FASTA

1086 bp · TkA05G082340|TK1151|CDS

ATGGAGCTCTGTGGAGCTTCTGCCTTGGCTTGGAGAACCTCAATTTCTCCTTCTCTCCACTTTTCTCCTCAACCGACTTCGTTGTGCGAATTCAGAAGAGTTAGGGTTTGGTGTGTAAAAACCGATGCCAATGGTTCGTCTCAGTCTCTTAAGGGAAACCAGATGACAGTATCTATAACAGGAGCTACTGGTTTTATAGGGAGTAAATTGGTGCAAAGGCTCTATGAAGATAATCATAGTATCTGTGTCCTGACTCGGTC...

Protein

Download Protein FASTA

361 aa · TkA05G082340|TK1151|PROTEIN

MELCGASALAWRTSISPSLHFSPQPTSLCEFRRVRVWCVKTDANGSSQSLKGNQMTVSITGATGFIGSKLVQRLYEDNHSICVLTRSRSKAQSIFPVKDFPGIVIAEEAQWKECIEGSSGVVNLAGLPISTRWSPEVKKEIKESRVRVTSKVVELINKSPSDSRPKVLVSATAVGYYGTSETQVFDEQSPSGNDYLAEVCREWEGKAVGVDKDVRLALIRIGVVLGKDGGALAKMIPIFMMFAGGPLGSGKQWFSWIHID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G082340
TK1151 IDTkA05G082340
OH-1004 IDLXL04_019744
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.100
Protein coverage (%)TK1151 92.521 / OH-1004 79.147
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G082340
LocationChr05:22295234-22303719 (-)
DescriptionSimilar to GC1: Epimerase family protein SDR39U1 homolog, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g21280 Putative NADP-dependent oxidoreductase that acts as a positive regulator of chloroplast division.
GIANT CHLOROPLAST 1 is essential for correct plastid division in Arabidopsis.2004 · DOI: 10.1016/j.cub.2004.04.031

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019744 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010020 chloroplast fission Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0016491 oxidoreductase activity Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
KEGG gene cross-reference
ath:AT2G21280
ecj:JW2301
eco:b2304
ecoc:C3026_12850
hsa:56948
mmu:654795
syn:slr1223
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.956
Rank 1 · TkA05G082340 · TK1151
Mitochondrion0.062
Rank 2 · TkA05G082340 · TK1151
Cytoplasm0.024
Rank 3 · TkA05G082340 · TK1151
Nucleus0.017
Rank 4 · TkA05G082340 · TK1151
Peroxisome0.016
Rank 5 · TkA05G082340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368NmrA55-90 aa
PF04321RmlD_sub_bind55-88 aa
PF00106adh_short56-93 aa
PF01118Semialdhyde_dh57-92 aa
PF02719Polysacc_synt_257-93 aa
PF01370Epimerase58-274 aa
PF16363GDP_Man_Dehyd59-160 aa
PF07993NAD_binding_459-92 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G082340PF05368NmrA55900.0006620.1
TkA05G082340PF04321RmlD_sub_bind55880.05913.1
TkA05G082340PF00106adh_short56930.08113.1
TkA05G082340PF01118Semialdhyde_dh57920.0216.0
TkA05G082340PF02719Polysacc_synt_257930.03713.9
TkA05G082340PF01370Epimerase582744.4e-2279.4
TkA05G082340PF16363GDP_Man_Dehyd591600.000122.6
TkA05G082340PF07993NAD_binding_459920.0001721.6
TkA05G082340PF010733Beta_HSD591550.005916.4
TkA05G082340PF13460NAD_binding_10611250.0007820.1
TkA05G082340PF03807F420_oxidored62960.1513.4
TkA05G082340PF10081Abhydrolase_91431820.2311.2
TkA05G082340PF03807F420_oxidored1521730.1513.4
TkA05G082340PF04321RmlD_sub_bind2102340.05913.1
TkA05G082340PF02719Polysacc_synt_22112950.03713.9
TkA05G082340PF16363GDP_Man_Dehyd2472750.000122.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJU9Arabidopsis thalianasp|Q9SJU9|GC1_ARATH Epimerase family protein SDR39U1 homolog, chloroplastic73.700%Swiss-ProtHigh

JBrowse

View in Genome Browser