TkA05G049180 | RubberDandelionOmics

Gene overview

TkA05G049180

Reference: TK1151 Chr: Chr05 Coordinates: 12963691-12966173 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1758 bp · TkA05G049180|TK1151|cDNA

ATTAATCTTTGCCCCTAACTCTTTTAAACTAGCTAAGTAGTGAATTCCTAAAGTAATGGAAATTCTTAAATTTCTTTTAGGTTTAATTTAGTTTAACTGGTTTTTATAAGCTGAAATTTATTAATGTTTTCGTATAACAAGCTTAGATCTTCATGATTTATTTTATGACTTTGTTCCACTGAAGTTGCAAAATTTGATAGATTTTATATCCAAATGATTTTAGTTACTAGTATAGAAAGGATACACATAGGACCCCATCC...

CDS

Download CDS FASTA

858 bp · TkA05G049180|TK1151|CDS

ATGGATCTCAACTTCTTCAAGCTATGCTCAGGCCTCAAGTTCCTCGGCTACCTAATGATCGTTCTCGTCGCTGCTATTGTCGCCGTTTCGTACTATGTTGTTATAATCCTCACTTGGGGTCCGCAGCTCTTCCACGGTGGTTTCAGATCGTTGTTGGCTTTCACCATCGTCCTCTTGTTTCACATCCTGCTTGTATTGTTAACATGGAGTTACATGATGGTAGTTCTCCAGGATCCCGGCTCTGTTCCTGAAAACTGGAA...

Protein

Download Protein FASTA

285 aa · TkA05G049180|TK1151|PROTEIN

MDLNFFKLCSGLKFLGYLMIVLVAAIVAVSYYVVIILTWGPQLFHGGFRSLLAFTIVLLFHILLVLLTWSYMMVVLQDPGSVPENWKPLSDENLESGVSTSQPPETSETSGYCRHCRNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCVGARNYKFFLLFLVYTFLETTMDTIILLPNFMKFFKDAKSHSNSPSELALTFLTFVLNLAFALSLVCFIIMHASLLSSNTTSVEVYEKKGVVRWKYDLGRKKNFEQVFGTRKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G049180`
TK1151 ID	TkA05G049180
OH-1004 ID	LXL04_022736
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	55.100
Protein coverage (%)	TK1151 97.895 / OH-1004 93.871 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G049180

Location Chr05:12963691-12966173 (-)

Description Similar to PAT14: Probable protein S-acyltransferase 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00840`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At3g60800`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At4g22750`	Palmitoyl acyltransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022736 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0006974 DNA damage response Biological Process

GO:0010150 leaf senescence Biological Process

GO:0016188 synaptic vesicle maturation Biological Process

GO:0018230 peptidyl-L-cysteine S-palmitoylation Biological Process

GO:0018345 protein palmitoylation Biological Process

GO:0019062 virion attachment to host cell Biological Process

GO:0044794 host-mediated activation of viral process Biological Process

GO:1900055 regulation of leaf senescence Biological Process

GO:2000377 regulation of reactive oxygen species metabolic process Biological Process

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

KEGG gene cross-reference

ath:AT3G60800

ath:AT4G00840

ath:AT4G22750

mmu:75965

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.420

Rank 1 · TkA05G049180 · TK1151

Cytoplasm0.253

Rank 2 · TkA05G049180 · TK1151

Endoplasmic reticulum0.241

Rank 3 · TkA05G049180 · TK1151

Cell membrane0.190

Rank 4 · TkA05G049180 · TK1151

Lysosome / Vacuole0.122

Rank 5 · TkA05G049180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01529DHHC14-73 aa

PF01529DHHC109-235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G049180	`PF01529`	DHHC	14	73	6.4e-36	124.1
TkA05G049180	`PF01529`	DHHC	109	235	6.4e-36	124.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q5M757`	Arabidopsis thaliana	sp\|Q5M757\|ZDH15_ARATH Probable protein S-acyltransferase 12	62.400%	Swiss-Prot	High
`Q8VYP5`	Arabidopsis thaliana	sp\|Q8VYP5\|ZDH14_ARATH Probable protein S-acyltransferase 14	54.100%	Swiss-Prot	High
`Q94C49`	Arabidopsis thaliana	sp\|Q94C49\|ZDH18_ARATH Probable protein S-acyltransferase 13	50.900%	Swiss-Prot	High

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