RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G022310
Reference: TK1151 Chr: Chr05 Coordinates: 6050904-6054151 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2396 bp · TkA05G022310|TK1151|cDNA

ATTTTCCTCCATCAGGTATCGAACAGGCGGGGAACCACAAGTAAGCTACTAAAAGGACGACCTATTCGGCGATCATCACTTAGCTTACGAGTCATGGAAATCGATGATGAAGGGATGAAATCTAAAGGGGAAGAAGAAGATAAGGTAAAACCCTTGGTGGTAATACTAGTCGGTGCACCTGGAAGTGGCAAATCGACCTTCTGTGACCACGTTATGCGGGTTTCCACCCGACCATGGGTCCGCGTTTGTCAGGTCTTTCT...

CDS

Download CDS FASTA

2106 bp · TkA05G022310|TK1151|CDS

ATTTTCCTCCATCAGGTATCGAACAGGCGGGGAACCACAAGTAAGCTACTAAAAGGACGACCTATTCGGCGATCATCACTTAGCTTACGAGTCATGGAAATCGATGATGAAGGGATGAAATCTAAAGGGGAAGAAGAAGATAAGGTAAAACCCTTGGTGGTAATACTAGTCGGTGCACCTGGAAGTGGCAAATCGACCTTCTGTGACCACGTTATGCGGGTTTCCACCCGACCATGGGTCCGCGTTTGTCAGGACACAAT...

Protein

Download Protein FASTA

701 aa · TkA05G022310|TK1151|PROTEIN

IFLHQVSNRRGTTSKLLKGRPIRRSSLSLRVMEIDDEGMKSKGEEEDKVKPLVVILVGAPGSGKSTFCDHVMRVSTRPWVRVCQDTIGNGKAGTKAQCLALSNTSLKEGKSILIDRCNLDKEQRADFINLIQSHQVDIHAVALDLPAKLCISRSVNRTNHEGNVQGGKAAMVVNQMLKKKESPKINEGFTRITFCYNENDVQSAMNTYGSLSSQNTLQGGCFGEKKTDSKVQVGIMKFLKRVDAPSDSKVTSDKTTPGPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G022310
TK1151 IDTkA05G022310
OH-1004 IDLXL04_024153
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)56.600
Protein coverage (%)TK1151 8.987 / OH-1004 38.384
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G022310
LocationChr05:6050904-6054151 (+)
DescriptionSimilar to BHLH140: Transcription factor bHLH140
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01310 Transcription factor bHLH140. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024153 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000012 single strand break repair Biological Process
GO:0006260 DNA replication Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006790 sulfur compound metabolic process Biological Process
GO:0009150 purine ribonucleotide metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0003697 single-stranded DNA binding Molecular Function
GO:0003725 double-stranded RNA binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0030983 mismatched DNA binding Molecular Function
GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.556
Rank 1 · TkA05G022310 · TK1151
Cytoplasm0.409
Rank 2 · TkA05G022310 · TK1151
Mitochondrion0.112
Rank 3 · TkA05G022310 · TK1151
Cell membrane0.071
Rank 4 · TkA05G022310 · TK1151
Endoplasmic reticulum0.053
Rank 5 · TkA05G022310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03193RsgA_GTPase28-100 aa
PF25199nSTAND_NTPase543-141 aa
PF00931NB-ARC45-73 aa
PF06414Zeta_toxin46-86 aa
PF13245AAA_1949-75 aa
PF13191AAA_1651-79 aa
PF03308MeaB52-125 aa
PF13671AAA_3353-163 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G022310PF03193RsgA_GTPase281000.05414.0
TkA05G022310PF25199nSTAND_NTPase5431410.1113.1
TkA05G022310PF00931NB-ARC45730.1512.3
TkA05G022310PF06414Zeta_toxin46860.0007419.7
TkA05G022310PF13245AAA_1949750.2412.3
TkA05G022310PF13191AAA_1651790.01416.6
TkA05G022310PF03308MeaB521250.04613.4
TkA05G022310PF13671AAA_33531632.2e-1454.7
TkA05G022310PF07931CPT53860.006417.0
TkA05G022310PF13555AAA_2953740.01515.8
TkA05G022310PF20720nSTAND353730.02415.0
TkA05G022310PF05729NACHT53730.1612.5
TkA05G022310PF13401AAA_2253730.1712.9
TkA05G022310PF13238AAA_18541641.7e-0526.0
TkA05G022310PF08433KTI12541840.005317.0
TkA05G022310PF00004AAA541160.02116.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M041Arabidopsis thalianasp|Q9M041|BH140_ARATH Transcription factor bHLH14058.600%Swiss-ProtHigh

JBrowse

View in Genome Browser