TkA05G016780 | RubberDandelionOmics

Gene overview

TkA05G016780

Reference: TK1151 Chr: Chr05 Coordinates: 4725530-4730826 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3233 bp · TkA05G016780|TK1151|cDNA

AAAACATGTTAAATACCAAAATGCCCTCCGCTCATCAGTCGATGAATAAAACTCAAATTAAACCCAGTAACAGACAGTCAAGACCCAAGAGACGGAGGAACGACGAAAAGATACCGAAAGTAACACGTCGTGAAATCAACGGCCGTCAACCGTCACATCCTCCTCTACCTCCGTCGTCCCAACCCTAACGCTACTCCATCTCCGATTGGTTTGCTCTCTATTCGGCATCTGTGCTGTGTACCAGTAGCTTTTTTGATATC...

CDS

Download CDS FASTA

2460 bp · TkA05G016780|TK1151|CDS

ATGGATGATTTTGGTATGTTAGCTAGAGATTTCGGGTTTAGGCCCCAAGGAAAATCTGCTCCGATGAAATCTGACTCTGGAGATTTCAGGAGCCGACCTCCACCATCGTCATCGCCGTCGCCGTCGCCGTTTGCTGCTGATGACAATCAAATATTTAACGATGTTTTTGGCGGGCCGCCAAAATTCACCAACAACACTAGATCAACACCGGCCATGTCGGATATCGATTACGATTCGATTTTCAAGAATTCGTCATCCAC...

Protein

Download Protein FASTA

819 aa · TkA05G016780|TK1151|PROTEIN

MDDFGMLARDFGFRPQGKSAPMKSDSGDFRSRPPPSSSPSPSPFAADDNQIFNDVFGGPPKFTNNTRSTPAMSDIDYDSIFKNSSSTNNSEAKSKSTSSNLPVYDKPVYDDDIFDGLPGMKSKSMHSASARYEENIFASMASSPPKRSQQSDHFDDLLGNLGRAEKVEPPKQKASKSPRGFDDLLPGFGSGGPASSSRSNSVPVPVSVPKETSNTMDDPFVVLESASPPVTSSQVPSFIDPLESVHKINKSKSTKTATSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G016780`
TK1151 ID	TkA05G016780
OH-1004 ID	LXL04_019076
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	87.200
Protein coverage (%)	TK1151 98.535 / OH-1004 96.474 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G016780

Location Chr05:4725530-4730826 (+)

Description Similar to At4g12770: Auxilin-related protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12770`	Promotes probably uncoating of clathrin-coated vesicles.	No verified direct reference in this release
`At4g12780`	Promotes uncoating of clathrin-coated vesicles.	No verified direct reference in this release
`At1g75310`	Auxilin-like protein 1.	No verified direct reference in this release
`At1g75100`	Required for chloroplast photorelocation movement; chloroplast accumulation upon low blue light and for chloroplast movement to the bottom of cells in darkness, by modulating chloroplast actin (Cp-actin) filaments distribution, appearance and disappearance.	An auxilin-like J-domain protein, JAC1, regulates phototropin-mediated chloroplast movement in Arabidopsis.2005 · DOI: 10.1104/pp.105.067371 Overexpression of an auxilin-like gene (F9E10.5) can suppress Al uptake in roots of Arabidopsis.2007 · DOI: 10.1093/jxb/erl221 Crystallographic and functional analyses of J-domain of JAC1 essential for chloroplast photorelocation movement in Arabidopsis thaliana.2010 · DOI: 10.1093/pcp/pcq089 Red light, Phot1 and JAC1 modulate Phot2-dependent reorganization of chloroplast actin filaments and chloroplast avoidance movement.2011 · DOI: 10.1093/pcp/pcr087

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019076 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0045806 negative regulation of endocytosis Biological Process

GO:0045926 negative regulation of growth Biological Process

GO:0072318 clathrin coat disassembly Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:1900186 negative regulation of clathrin-dependent endocytosis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009504 cell plate Cellular Component

KEGG gene cross-reference

ath:AT1G75310

ath:AT4G12770

ath:AT4G12780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.648

Rank 1 · TkA05G016780 · TK1151

Cell membrane0.166

Rank 2 · TkA05G016780 · TK1151

Golgi apparatus0.154

Rank 3 · TkA05G016780 · TK1151

Nucleus0.154

Rank 4 · TkA05G016780 · TK1151

Endoplasmic reticulum0.078

Rank 5 · TkA05G016780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04696Pinin_SDK_memA154-173 aa

PF10902WYL_2410-457 aa

PF04696Pinin_SDK_memA435-484 aa

PF04696Pinin_SDK_memA677-763 aa

PF00226DnaJ766-812 aa

PF10902WYL_2775-818 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G016780	`PF04696`	Pinin_SDK_memA	154	173	0.0017	19.1
TkA05G016780	`PF10902`	WYL_2	410	457	0.34	11.9
TkA05G016780	`PF04696`	Pinin_SDK_memA	435	484	0.0017	19.1
TkA05G016780	`PF04696`	Pinin_SDK_memA	677	763	0.0017	19.1
TkA05G016780	`PF00226`	DnaJ	766	812	0.00014	22.6
TkA05G016780	`PF10902`	WYL_2	775	818	0.34	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WQ57`	Arabidopsis thaliana	sp\|Q0WQ57\|AUXI2_ARATH Auxilin-related protein 2	50.200%	Swiss-Prot	High
`Q9SU08`	Arabidopsis thaliana	sp\|Q9SU08\|AUXI1_ARATH Auxilin-related protein 1	48.100%	Swiss-Prot	Medium
`Q9FWS1`	Arabidopsis thaliana	sp\|Q9FWS1\|AUL1_ARATH Auxilin-like protein 1	64.400%	Swiss-Prot	Low
`Q9C9Q4`	Arabidopsis thaliana	sp\|Q9C9Q4\|JAC1_ARATH J domain-containing protein required for chloroplast accumulation response 1	59.800%	Swiss-Prot	Low

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