LXL04_019076 | RubberDandelionOmics

Gene overview

LXL04_019076

Reference: OH-1004 Chr: Chr04 Coordinates: 23187271-23192265 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2811 bp · LXL04_019076|LXL04_019076|OH1004|cDNA

ATGGATGATTTTGGTATGTTAGCTAGAGATTTCGGGTTTAGGCCCCAAGGAAAATCTGCTCCGATGAAATCTGACTCTGGAGATTTCAGGAGCCGACCTCCACCATCGTCATCGCCGTCGCCGTCGCCGTTTGCTGCTGATGACAATCAAATATTTAACGATGTTTTTGGCGGCCCGCCAAAATTCACCAACAACACTAGATCAACACCGGCCATGTCGGATATCGATTACGATTCGATTTTCAAGAATTCGTCATCCAC...

CDS

Download CDS FASTA

2811 bp · LXL04_019076|LXL04_019076|OH1004|CDS

ATGGATGATTTTGGTATGTTAGCTAGAGATTTCGGGTTTAGGCCCCAAGGAAAATCTGCTCCGATGAAATCTGACTCTGGAGATTTCAGGAGCCGACCTCCACCATCGTCATCGCCGTCGCCGTCGCCGTTTGCTGCTGATGACAATCAAATATTTAACGATGTTTTTGGCGGCCCGCCAAAATTCACCAACAACACTAGATCAACACCGGCCATGTCGGATATCGATTACGATTCGATTTTCAAGAATTCGTCATCCAC...

Protein

Download Protein FASTA

936 aa · LXL04_019076|LXL04_019076|OH1004|PROTEIN

MDDFGMLARDFGFRPQGKSAPMKSDSGDFRSRPPPSSSPSPSPFAADDNQIFNDVFGGPPKFTNNTRSTPAMSDIDYDSIFKNSSSTNNSEAKSKSTSSNLPVYDKPVYDDDIFDGLPGMKSKSMHSASARYEENIFASMASSPPKRSQQSDHFDDLLGNLGRAEKVEPPKQKASKSPRGFDDLLPGFGSGGPASSSRSPVISPVSQGTTCLFKNSPTVIVFKADMLHFTSLAVSCDYNEHIDRCICSCFSIYVPLTLYA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019076`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_019076

Location Chr04:23187271-23192265 (+)

Description Similar to At4g12770: Auxilin-related protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g12770`	Promotes probably uncoating of clathrin-coated vesicles.	No verified direct reference in this release
`At4g12780`	Promotes uncoating of clathrin-coated vesicles.	No verified direct reference in this release
`At1g75310`	Auxilin-like protein 1.	No verified direct reference in this release
`At1g75100`	Required for chloroplast photorelocation movement; chloroplast accumulation upon low blue light and for chloroplast movement to the bottom of cells in darkness, by modulating chloroplast actin (Cp-actin) filaments distribution, appearance and disappearance.	An auxilin-like J-domain protein, JAC1, regulates phototropin-mediated chloroplast movement in Arabidopsis.2005 · DOI: 10.1104/pp.105.067371 Overexpression of an auxilin-like gene (F9E10.5) can suppress Al uptake in roots of Arabidopsis.2007 · DOI: 10.1093/jxb/erl221 Crystallographic and functional analyses of J-domain of JAC1 essential for chloroplast photorelocation movement in Arabidopsis thaliana.2010 · DOI: 10.1093/pcp/pcq089 Red light, Phot1 and JAC1 modulate Phot2-dependent reorganization of chloroplast actin filaments and chloroplast avoidance movement.2011 · DOI: 10.1093/pcp/pcr087

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019076 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0045806 negative regulation of endocytosis Biological Process

GO:0045926 negative regulation of growth Biological Process

GO:0072318 clathrin coat disassembly Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:1900186 negative regulation of clathrin-dependent endocytosis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009504 cell plate Cellular Component

KEGG gene cross-reference

ath:AT1G75310

ath:AT4G12770

ath:AT4G12780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.597

Rank 1 · LXL04_019076 · OH-1004

Golgi apparatus0.236

Rank 2 · LXL04_019076 · OH-1004

Nucleus0.156

Rank 3 · LXL04_019076 · OH-1004

Endoplasmic reticulum0.124

Rank 4 · LXL04_019076 · OH-1004

Cell membrane0.116

Rank 5 · LXL04_019076 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WQ57`	Arabidopsis thaliana	Auxilin-related protein 2	46.610%	Swiss-Prot	moderate database homology
`Q9SU08`	Arabidopsis thaliana	Auxilin-related protein 1	46.848%	Swiss-Prot	moderate database homology
`Q9FWS1`	Arabidopsis thaliana	Auxilin-like protein 1	61.379%	Swiss-Prot	weak database homology
`Q9C9Q4`	Arabidopsis thaliana	J domain-containing protein required for chloroplast accumulation response 1	53.922%	Swiss-Prot	weak database homology

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