TkA05G015580 | RubberDandelionOmics

Gene overview

TkA05G015580

Reference: TK1151 Chr: Chr05 Coordinates: 4419593-4421873 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1425 bp · TkA05G015580|TK1151|cDNA

ATGGAGTCATGGATAGGGAAGTCCATTCATAGGTGCATTACCATGGCGATATCAGATTTTTATGCTCTTAATCACAATTACAAAACAAGGATAGTTGTTCACACCAGGGACTCTAAAGGAGATCTGGTAAACGCTCTCTCATATGCGAACTTATTGTCAGTGTTTGCTGATAAAGAAAATGTTCCTATATTTTCTTTTGCTAGTTCTTCCTCAATGAATTACCCTTACCTTTTCAAAATCAAAGGAGATGAATCCACTAT...

CDS

Download CDS FASTA

1425 bp · TkA05G015580|TK1151|CDS

ATGGAGTCATGGATAGGGAAGTCCATTCATAGGTGCATTACCATGGCGATATCAGATTTTTATGCTCTTAATCACAATTACAAAACAAGGATAGTTGTTCACACCAGGGACTCTAAAGGAGATCTGGTAAACGCTCTCTCATATGCGAACTTATTGTCAGTGTTTGCTGATAAAGAAAATGTTCCTATATTTTCTTTTGCTAGTTCTTCCTCAATGAATTACCCTTACCTTTTCAAAATCAAAGGAGATGAATCCACTAT...

Protein

Download Protein FASTA

474 aa · TkA05G015580|TK1151|PROTEIN

MESWIGKSIHRCITMAISDFYALNHNYKTRIVVHTRDSKGDLVNALSYANLLSVFADKENVPIFSFASSSSMNYPYLFKIKGDESTMAESIAALVESYKWRNVIFMYENTDDGREILPYLAKSFQEKNIHISYTSPISTTATRDDVTKELQTLMNFHTSIIIVHMSPLLASKVFLKAKDLRMDKEEYGWILMEKTVDLFRSTNFDVIESLQGAMYPTSVTKEVPVPAIWAYDTIWALAMCVEKVGVPNNGPLLLQELLKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G015580`
TK1151 ID	TkA05G015580
OH-1004 ID	LXL04_019064
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	70.200
Protein coverage (%)	TK1151 94.093 / OH-1004 74.618 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G015580

Location Chr05:4419593-4421873 (-)

Description Similar to GLR1.2: Glutamate receptor 1.2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11180`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At5g11210`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At5g48400`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At2g24710`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At5g48410`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019064 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0030003 intracellular monoatomic cation homeostasis Biological Process

GO:0071230 cellular response to amino acid stimulus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005261 monoatomic cation channel activity Molecular Function

GO:0005262 calcium channel activity Molecular Function

GO:0008066 glutamate receptor activity Molecular Function

GO:0015276 ligand-gated monoatomic ion channel activity Molecular Function

KEGG gene cross-reference

ath:AT2G29120

ath:AT3G07520

ath:AT5G27100

ath:AT5G48400

ath:AT5G48410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.544

Rank 1 · TkA05G015580 · TK1151

Extracellular0.176

Rank 2 · TkA05G015580 · TK1151

Endoplasmic reticulum0.108

Rank 3 · TkA05G015580 · TK1151

Cytoplasm0.100

Rank 4 · TkA05G015580 · TK1151

Lysosome / Vacuole0.056

Rank 5 · TkA05G015580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01094ANF_receptor12-50 aa

PF01094ANF_receptor47-259 aa

PF13458Peripla_BP_652-157 aa

PF00497SBP_bac_3130-130 aa

PF00497SBP_bac_3269-351 aa

PF10613Lig_chan-Glu_bd297-347 aa

PF00060Lig_chan368-415 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G015580	`PF01094`	ANF_receptor	12	50	3.5e-38	132.3
TkA05G015580	`PF01094`	ANF_receptor	47	259	3.5e-38	132.3
TkA05G015580	`PF13458`	Peripla_BP_6	52	157	6e-05	23.6
TkA05G015580	`PF00497`	SBP_bac_3	130	130	4e-06	27.3
TkA05G015580	`PF00497`	SBP_bac_3	269	351	4e-06	27.3
TkA05G015580	`PF10613`	Lig_chan-Glu_bd	297	347	2.3e-06	28.4
TkA05G015580	`PF00060`	Lig_chan	368	415	4.3e-10	40.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LFN8`	Arabidopsis thaliana	sp\|Q9LFN8\|GLR26_ARATH Glutamate receptor 2.6	27.600%	Swiss-Prot	Low
`Q9LFN5`	Arabidopsis thaliana	sp\|Q9LFN5\|GLR25_ARATH Glutamate receptor 2.5	27.400%	Swiss-Prot	Low
`Q9LV72`	Arabidopsis thaliana	sp\|Q9LV72\|GLR12_ARATH Glutamate receptor 1.2	25.200%	Swiss-Prot	Low
`Q9SHV2`	Arabidopsis thaliana	sp\|Q9SHV2\|GLR23_ARATH Glutamate receptor 2.3	30.800%	Swiss-Prot	Medium
`Q9FH75`	Arabidopsis thaliana	sp\|Q9FH75\|GLR13_ARATH Glutamate receptor 1.3	28.100%	Swiss-Prot	Low

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