LXL04_019064 | RubberDandelionOmics

Gene overview

LXL04_019064

Reference: OH-1004 Chr: Chr04 Coordinates: 22941686-22944661 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2556 bp · LXL04_019064|LXL04_019064|OH1004|cDNA

ATGGAGATGGTCGAGCAGAACAACATCAACCTTTACATTCTAATACTATTGTGCATTTTAAACCATATATTATGTGCACAATCCATTCCATCAGAAagcaaaaacatcaaaataaacAAAGAGATGTTAATACACAGGGGGATCATTCTAGACATGGAGTCATGGATAGGGAAGTCCATTCATAGGTGCATTACCATGGCGATATCAGATTTTTATGCTCTTAATCACAATTACAAAACAAGGATAGTTGTTCACACCAG...

CDS

Download CDS FASTA

2556 bp · LXL04_019064|LXL04_019064|OH1004|CDS

ATGGAGATGGTCGAGCAGAACAACATCAACCTTTACATTCTAATACTATTGTGCATTTTAAACCATATATTATGTGCACAATCCATTCCATCAGAAAGCAAAAACATCAAAATAAACAAAGAGATGTTAATACACAGGGGGATCATTCTAGACATGGAGTCATGGATAGGGAAGTCCATTCATAGGTGCATTACCATGGCGATATCAGATTTTTATGCTCTTAATCACAATTACAAAACAAGGATAGTTGTTCACACCAG...

Protein

Download Protein FASTA

851 aa · LXL04_019064|LXL04_019064|OH1004|PROTEIN

MEMVEQNNINLYILILLCILNHILCAQSIPSESKNIKINKEMLIHRGIILDMESWIGKSIHRCITMAISDFYALNHNYKTRIVVHTRDSKGDLVNALSYAVDDLLKNVKVQAIIGPETHLQSNLLSVFADKENVPIFSFASSSSMNYPYLFKIKGDESTMAESIAALVESYKWRNVIFMYENTDDGREILPYLAKSFQEKNIHISYTSPISTTATRDDVTKELQTLMNFHTSIIIVHMSPLLASKVFLKAKDLRMDKEEY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_019064`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_019064

Location Chr04:22941686-22944661 (-)

Description Similar to GLR1.2: Glutamate receptor 1.2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g48400`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At2g29120`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At3g07520`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	Arabidopsis thaliana glutamate receptor ion channel function demonstrated by ion pore transplantation.2008 · DOI: 10.1016/j.jmb.2008.06.076
`At5g48410`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release
`At5g27100`	Glutamate-gated receptor that probably acts as a non-selective cation channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019064 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006816 calcium ion transport Biological Process

GO:0006874 intracellular calcium ion homeostasis Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0019722 calcium-mediated signaling Biological Process

GO:0030003 intracellular monoatomic cation homeostasis Biological Process

GO:0071230 cellular response to amino acid stimulus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005261 monoatomic cation channel activity Molecular Function

GO:0005262 calcium channel activity Molecular Function

GO:0008066 glutamate receptor activity Molecular Function

GO:0015276 ligand-gated monoatomic ion channel activity Molecular Function

KEGG gene cross-reference

ath:AT2G29120

ath:AT3G07520

ath:AT5G27100

ath:AT5G48400

ath:AT5G48410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.831

Rank 1 · LXL04_019064 · OH-1004

Endoplasmic reticulum0.074

Rank 2 · LXL04_019064 · OH-1004

Cytoplasm0.066

Rank 3 · LXL04_019064 · OH-1004

Lysosome / Vacuole0.033

Rank 4 · LXL04_019064 · OH-1004

Nucleus0.030

Rank 5 · LXL04_019064 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13458.13Peripla_BP_656-369 aa

PF01094.35ANF_receptor63-384 aa

PF00497.26SBP_bac_3472-774 aa

PF10613.15Lig_chan-Glu_bd500-550 aa

PF00060.33Lig_chan566-806 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_019064	`PF13458.13`	Peripla_BP_6	56	369	5e-12	46.8
LXL04_019064	`PF01094.35`	ANF_receptor	63	384	1.2e-63	216.0
LXL04_019064	`PF00497.26`	SBP_bac_3	472	774	1e-12	48.6
LXL04_019064	`PF10613.15`	Lig_chan-Glu_bd	500	550	3.3e-06	27.9
LXL04_019064	`PF00060.33`	Lig_chan	566	806	7.6e-20	71.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LV72`	Arabidopsis thaliana	Glutamate receptor 1.2	34.934%	Swiss-Prot	moderate database homology
`Q8LGN0`	Arabidopsis thaliana	Glutamate receptor 2.7	35.662%	Swiss-Prot	moderate database homology
`Q8LGN1`	Arabidopsis thaliana	Glutamate receptor 1.4	36.181%	Swiss-Prot	moderate database homology
`Q9FH75`	Arabidopsis thaliana	Glutamate receptor 1.3	34.950%	Swiss-Prot	moderate database homology
`O04660`	Arabidopsis thaliana	Glutamate receptor 2.1	32.579%	Swiss-Prot	moderate database homology

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