TkA05G005530 | RubberDandelionOmics

Gene overview

TkA05G005530

Reference: TK1151 Chr: Chr05 Coordinates: 1647044-1650388 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1890 bp · TkA05G005530|TK1151|cDNA

CCAAACCCACCCCATTACATGTCTACACTTAAGTTTATGACACACAAAGTTCTAGATCTCAAAATCGAGATTAGATTTCACATGTCAACACACGTGCCCGTGGTTTGACGACGCTCATGGTCTCCAAATTTTGAGATCATTCACGACCTTCATTTTTATCGACCGATTCTAAAGCACTTTCAAAAAATCTTGTTCTTCTCACTTTTCAACCCATTTTCTAAGCTATTGGAGAAGCTGTTTTAAAAAGTGATTTTCACTAG...

CDS

Download CDS FASTA

1254 bp · TkA05G005530|TK1151|CDS

ATGAGAATTGTTGGAAGGGTTTTGTGCAGAAACTTGGTTCGGGCTTTCTCAGGTCGCAGCTTAGGAGATGGAAGCAATCATCTGCGGTCCAAGACCCATTCTTTCTCTACTCCCCCGTACTCCACTGTGGCTGAGCTGCAACCTCAATCATCCGCGGAACTGATCAAGATTATGGAGCACAGGCTGTCGGCTATTGAGCACCGGAGTGTTTATCTTCAGGGCATTATAAACCAGCCAGAAGCCTCATCAACTGAGTATTC...

Protein

Download Protein FASTA

417 aa · TkA05G005530|TK1151|PROTEIN

MRIVGRVLCRNLVRAFSGRSLGDGSNHLRSKTHSFSTPPYSTVAELQPQSSAELIKIMEHRLSAIEHRSVYLQGIINQPEASSTEYSRANKELQNLNVKMDLISKLRTIQKEIESLKSLASDCEKDKDMQEMAYEELEVALKEEKNVHTLLLKALLPKDDADERGCILEVRAGTGGEEASLFAMDTFKMYERYSQKKGWRFEVVDVTDSNMKGYKEATAAISGVDVYGKLKFESGVHRVQRVPVTEKCGRVHTSAVSVAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G005530`
TK1151 ID	TkA05G005530
OH-1004 ID	LXL04_018963
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G005530

Location Chr05:1647044-1650388 (+)

Description Similar to prfA: Peptide chain release factor 1 (Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47020`	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA in mitochondria.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018963 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016149 translation release factor activity, codon specific Molecular Function

KEGG gene cross-reference

ath:AT2G47020

rbo:A1I_06315

rru:Rru_A0750

swi:Swit_2530

zmo:ZMO1509

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.692

Rank 1 · TkA05G005530 · TK1151

Plastid0.199

Rank 2 · TkA05G005530 · TK1151

Cytoplasm0.083

Rank 3 · TkA05G005530 · TK1151

Nucleus0.080

Rank 4 · TkA05G005530 · TK1151

Peroxisome0.014

Rank 5 · TkA05G005530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21187CYAA_C46-73 aa

PF08429PLU-146-144 aa

PF28258MSC_0620_UU05257-152 aa

PF19595DUF610058-160 aa

PF27113GbsR_C58-97 aa

PF03462PCRF72-258 aa

PF21187CYAA_C89-147 aa

PF27113GbsR_C106-138 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G005530	`PF21187`	CYAA_C	46	73	0.055	14.5
TkA05G005530	`PF08429`	PLU-1	46	144	0.53	10.1
TkA05G005530	`PF28258`	MSC_0620_UU052	57	152	0.33	10.1
TkA05G005530	`PF19595`	DUF6100	58	160	0.17	12.2
TkA05G005530	`PF27113`	GbsR_C	58	97	5.4	8.3
TkA05G005530	`PF03462`	PCRF	72	258	2e-59	201.4
TkA05G005530	`PF21187`	CYAA_C	89	147	0.055	14.5
TkA05G005530	`PF27113`	GbsR_C	106	138	5.4	8.3
TkA05G005530	`PF00472`	RF-1	265	375	2.6e-39	134.5
TkA05G005530	`PF08429`	PLU-1	305	326	0.53	10.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A2RVR7`	Arabidopsis thaliana	sp\|A2RVR7\|MTRF1_ARATH Peptide chain release factor 1, mitochondrial	69.900%	Swiss-Prot	High

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