TkA04G513840 | RubberDandelionOmics

Gene overview

TkA04G513840

Reference: TK1151 Chr: Chr04 Coordinates: 129803104-129805759 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1688 bp · TkA04G513840|TK1151|cDNA

AAACAACAAAAGTAGGTGGATCTTCTTCAATCTTAAAACTAATGGCTTTTGCAAGTTCGATTCTCTTCAACCTTAATTTCTCTTTGAAGCTCAACAATGGATCAAAACTTCACCTCCCAAAATATTCTCTCCGAAAGCCTAGAAATTCCTCATCCTTATCATCTACACATCTTTTTTCTCCATGCGTTCATGTTCCGTCAGTGAAAATGCAGATGGATCCAGTATCAGTTACAGGAAGATCGTTCCAACTCGATACCAAT...

CDS

Download CDS FASTA

900 bp · TkA04G513840|TK1151|CDS

ATGAAGGAGTATCCCTTCTTTTTAGCTCAAGTTAACACTTTTGGGTATGTGGCGATTTATTTTTCTATCCTGTATCTAAGGCATCGTGCTGGAATTGTAACCGACGAGATGATGGTCCTTCCAAAATGGCGGTTTGCGGTAATTGGTATGCTAGAAGCCCTAGGAGTTGTTATTGGGATGTACTCTGCAGCAATGCTTCCTGGACCTGCTATACCAATATTAAAATCAGACGTTTTTTGTTATGGCAGCTGGGGTTTTCT...

Protein

Download Protein FASTA

299 aa · TkA04G513840|TK1151|PROTEIN

MKEYPFFLAQVNTFGYVAIYFSILYLRHRAGIVTDEMMVLPKWRFAVIGMLEALGVVIGMYSAAMLPGPAIPILKSDVFCYGSWGFLLYFFGRRYSWNKIGGCLLVAAAGVVTAIASGSESGQMLAGVGMMWPIMMVVSSAFQAGATIIKGKLLDIFVVNSFGSGFQALLCSSSALFIKSERHTTSRASFIHKEWSWLLSQHWGHVIRLRWFTAVPLLYIINNIAFNISVLNLVKISSAVVSSLAIVLSVPTTIYILSLP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G513840`
TK1151 ID	TkA04G513840
OH-1004 ID	LXL04_039183
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	73.200
Protein coverage (%)	TK1151 99.666 / OH-1004 70.709 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G513840

Location Chr04:129803104-129805759 (-)

Description Similar to CLT2: Protein CLT2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g24460`	Involved in thiol transport from the plastid to the cytosol.	No verified direct reference in this release
`At5g12170`	Involved in thiol transport from the plastid to the cytosol.	No verified direct reference in this release
`At5g19380`	Involved in thiol transport from the plastid to the cytosol.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039183 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0006865 amino acid transport Biological Process

GO:0034635 glutathione transport Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0005774 vacuolar membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0012506 vesicle membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

GO:0042910 xenobiotic transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT4G24460

ath:AT5G12170

ath:AT5G19380

ddi:DDB_G0276943

ddi:DDB_G0277321

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.329

Rank 1 · TkA04G513840 · TK1151

Endoplasmic reticulum0.305

Rank 2 · TkA04G513840 · TK1151

Lysosome / Vacuole0.178

Rank 3 · TkA04G513840 · TK1151

Cytoplasm0.129

Rank 4 · TkA04G513840 · TK1151

Cell membrane0.118

Rank 5 · TkA04G513840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08627CRT-like1-171 aa

PF08627CRT-like217-286 aa

PF27655GDU_TM274-286 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G513840	`PF08627`	CRT-like	1	171	7.7e-17	62.0
TkA04G513840	`PF08627`	CRT-like	217	286	7.7e-17	62.0
TkA04G513840	`PF27655`	GDU_TM	274	286	0.7	10.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A1L4X0`	Arabidopsis thaliana	sp\|A1L4X0\|CLT2_ARATH Protein CLT2, chloroplastic	52.900%	Swiss-Prot	High
`Q8RWL5`	Arabidopsis thaliana	sp\|Q8RWL5\|CLT3_ARATH Protein CLT3, chloroplastic	42.300%	Swiss-Prot	Medium
`Q058P6`	Arabidopsis thaliana	sp\|Q058P6\|CLT1_ARATH Protein CLT1, chloroplastic	41.400%	Swiss-Prot	Medium

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