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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G473390
Reference: TK1151 Chr: Chr04 Coordinates: 119541680-119547791 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3840 bp · TkA04G473390|TK1151|cDNA

TACGCTGATAATCAGACTTGCTTATAAATCTGATAAGATAGCAGAAAAAGGTAGACTCTTCTGCCAAAATACGCATCGAAAATCGCGAGACTAAGTCCCCTACCCCCCACCTTTCTCTCTTTCTATCTTCTTCGCAGCCTTCGGAATTAATACATTGAACTTTTGCTGAAAACCCTAGAAACACACTTGATTTATTGGTTTTTGGAGCTTTGATCTCGATTTTTGGGACTTTGTTGATGATAATTTGTTTTCAATGTCGT...

CDS

Download CDS FASTA

3342 bp · TkA04G473390|TK1151|CDS

ATGTCGTCACTGAGTAGAGAATTGGTTTTTCTCATACTTCAATTTCTCGAAGAGGAAAAATTTAAGGAGGCTGTGCACAGGCTTGAGCAAGAGTCTGGATTCTACTTTAACGTTAAGTATTTTGAGGAGAAAGTCCATGCTGGTGAATGGGATGAAGTTGAGAAATACCTGTCTGGATACACCAAGGTTGATGATAACAGATACTCAATGAAGATCTTCTTTGAAATCAGAAAACAAAAGTATCTTGAAGCCCTTGATAG...

Protein

Download Protein FASTA

1113 aa · TkA04G473390|TK1151|PROTEIN

MSSLSRELVFLILQFLEEEKFKEAVHRLEQESGFYFNVKYFEEKVHAGEWDEVEKYLSGYTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVNDLKVFSTFNEDLYKEITQLLTLSNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFREKLVFPTLKSSRLRTLINQSLNWQHQLCKSPRPNPDIKTLFIDHSCSTPNGNIMPTPVNLSPAAITKPTAYPSLGAHGPFVPTTSNPNANALAGWMANPANA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G473390
TK1151 IDTkA04G473390
OH-1004 IDLXL04_002707
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)61.000
Protein coverage (%)TK1151 99.730 / OH-1004 62.746
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G473390
LocationChr04:119541680-119547791 (-)
DescriptionSimilar to TPR4: Topless-related protein 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g27030 Transcriptional corepressor. No verified direct reference in this release
At3g16830 Transcriptional corepressor. No verified direct reference in this release
At1g80490 Transcriptional corepressor.
Arabidopsis resistance protein SNC1 activates immune responses through association with a transcriptional corepressor.2010 · DOI: 10.1073/pnas.1002828107

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0254100 Probable downstream regulator of strigolactones signaling. No verified direct reference in this release
Os08g0162100 Transcriptional corepressor involved in branch formation regulation, presumably by suppressing primary branch formation and promoting secondary branch formation.
OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice.2012 · DOI: 10.1007/s00425-011-1532-7
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002707 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009733 response to auxin Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0009867 jasmonic acid mediated signaling pathway Biological Process
GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0010051 xylem and phloem pattern formation Biological Process
GO:0010072 primary shoot apical meristem specification Biological Process
GO:0010229 inflorescence development Biological Process
GO:0010336 gibberellic acid homeostasis Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT1G15750
ath:AT1G80490
ath:AT3G15880
dosa:Os03g0254700
dosa:Os08g0162100
osa:4332285
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.620
Rank 1 · TkA04G473390 · TK1151
Cytoplasm0.315
Rank 2 · TkA04G473390 · TK1151
Lysosome / Vacuole0.066
Rank 3 · TkA04G473390 · TK1151
Cell membrane0.060
Rank 4 · TkA04G473390 · TK1151
Golgi apparatus0.042
Rank 5 · TkA04G473390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25437BRWD1_N3-31 aa
PF17814LisH_TPL5-34 aa
PF23627LisH_WDR267-34 aa
PF21889TPR1-like_2nd37-161 aa
PF10607CTLH70-134 aa
PF25009DUF7785109-176 aa
PF21359zf_topless164-204 aa
PF09286Pro-kuma_activ276-345 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G473390PF25437BRWD1_N3310.05914.4
TkA04G473390PF17814LisH_TPL5342.2e-1143.9
TkA04G473390PF23627LisH_WDR267340.1911.9
TkA04G473390PF21889TPR1-like_2nd371619e-62207.6
TkA04G473390PF10607CTLH701340.03714.8
TkA04G473390PF25009DUF77851091760.6311.3
TkA04G473390PF21359zf_topless1642046.8e-2587.1
TkA04G473390PF09286Pro-kuma_activ2763450.1113.5
TkA04G473390PF25009DUF77852993370.6311.3
TkA04G473390PF23414Beta-prop_EML_23194607.5e-39134.4
TkA04G473390PF23341PEP5_VPS11_N3284712.8e-0834.0
TkA04G473390PF30506Beta-prop_MIP23284260.1911.2
TkA04G473390PF25391WD40_Gbeta3293832e-1350.8
TkA04G473390PF23393Beta-prop_WDR90_POC16_2nd3303812.3e-1763.8
TkA04G473390PF25173Beta-prop_WDR3_1st3313832.3e-45155.3
TkA04G473390PF25174Beta-prop_THOC33313965.2e-42144.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84JM4Arabidopsis thalianasp|Q84JM4|TPR3_ARATH Topless-related protein 370.600%Swiss-ProtHigh
Q9LRZ0Arabidopsis thalianasp|Q9LRZ0|TPR2_ARATH Topless-related protein 271.000%Swiss-ProtHigh
Q0WV90Arabidopsis thalianasp|Q0WV90|TPR1_ARATH Topless-related protein 161.300%Swiss-ProtHigh
Q5NBT9Oryza sativa subsp. japonicasp|Q5NBT9|TPR1_ORYSJ Protein TPR169.600%Swiss-ProtHigh
Q0J7U6Oryza sativa subsp. japonicasp|Q0J7U6|TPR2_ORYSJ Protein TOPLESS-RELATED PROTEIN 262.400%Swiss-ProtHigh

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