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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G473110
Reference: TK1151 Chr: Chr04 Coordinates: 119473515-119475768 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1602 bp · TkA04G473110|TK1151|cDNA

ATGTCTTCAGGTAGGGAAGCTAAACAAATAAAGAAGACAAGGGAAAAGAAGAAGGTTTCATATACAGAAGATGACGAGGATGATGACTATTTGGAATTCATGTCCTCAGTCAAAAACAGAAACCAGAAAAAGAAGAATCATGAAGAAAAGAAGGTTATGTATATAGATGATCATGAGGAAAAGAATAGGGTTTCATATACAGAAGAGGGTGATGATGAAGAGGAGGACTATTCAGAATTCATGTCTTTGGGTAAAAAGAA...

CDS

Download CDS FASTA

1602 bp · TkA04G473110|TK1151|CDS

ATGTCTTCAGGTAGGGAAGCTAAACAAATAAAGAAGACAAGGGAAAAGAAGAAGGTTTCATATACAGAAGATGACGAGGATGATGACTATTTGGAATTCATGTCCTCAGTCAAAAACAGAAACCAGAAAAAGAAGAATCATGAAGAAAAGAAGGTTATGTATATAGATGATCATGAGGAAAAGAATAGGGTTTCATATACAGAAGAGGGTGATGATGAAGAGGAGGACTATTCAGAATTCATGTCTTTGGGTAAAAAGAA...

Protein

Download Protein FASTA

533 aa · TkA04G473110|TK1151|PROTEIN

MSSGREAKQIKKTREKKKVSYTEDDEDDDYLEFMSSVKNRNQKKKNHEEKKVMYIDDHEEKNRVSYTEEGDDEEEDYSEFMSLGKKKPHVKNRVSDTEEKKTIKKRKTKTMQNSKLSESDFLEDEDETPNPKKPEKEKKKKKKTKRPTKKTPSSKDKKTKKPPPESESDSDFVSDHEYTISEEEREQMREARVYCANLRAKLRTSSSQRKYQIRKGKEKLQLQDTKHETGKQVCGICLSQEAKRTVRGLLNCCLHYFCFS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G473110
TK1151 IDTkA04G473110
OH-1004 IDLXL04_008742
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)52.200
Protein coverage (%)TK1151 24.953 / OH-1004 21.145
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G473110
LocationChr04:119473515-119475768 (-)
DescriptionSimilar to Phrf1: PHD and RING finger domain-containing protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008742 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006366 transcription by RNA polymerase II Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006914 autophagy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016020 membrane Cellular Component
GO:0032991 protein-containing complex Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0019904 protein domain specific binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
GO:0070063 RNA polymerase binding Molecular Function
KEGG gene cross-reference
hsa:57661
mmu:101471
ppa:PAS_chr1-1_0041
spo:2539058
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965
Rank 1 · TkA04G473110 · TK1151
Cytoplasm0.125
Rank 2 · TkA04G473110 · TK1151
Cell membrane0.023
Rank 3 · TkA04G473110 · TK1151
Endoplasmic reticulum0.012
Rank 4 · TkA04G473110 · TK1151
Mitochondrion0.010
Rank 5 · TkA04G473110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24017Beta-prop_SCAP56-276 aa
PF19604DUF6109131-170 aa
PF05290Baculo_IE-1202-286 aa
PF03854zf-P11230-281 aa
PF15227zf-C3HC4_4230-253 aa
PF12678zf-rbx1232-276 aa
PF13639zf-RING_2233-276 aa
PF00097zf-C3HC4234-275 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G473110PF24017Beta-prop_SCAP562766.46.2
TkA04G473110PF19604DUF61091311705.96.0
TkA04G473110PF05290Baculo_IE-12022860.01216.3
TkA04G473110PF03854zf-P112302810.003517.7
TkA04G473110PF15227zf-C3HC4_42302535.08.0
TkA04G473110PF12678zf-rbx12322760.0007420.4
TkA04G473110PF13639zf-RING_22332761.5e-0629.1
TkA04G473110PF00097zf-C3HC42342750.0004320.8
TkA04G473110PF13445zf-RING_UBOX2342730.004417.7
TkA04G473110PF13923zf-C3HC4_22342750.00916.5
TkA04G473110PF14634zf-RING_52342770.03714.7
TkA04G473110PF14447Prok-RING_42342810.2312.1
TkA04G473110PF12861zf-ANAPC112502811.210.0
TkA04G473110PF15227zf-C3HC4_42532755.08.0
TkA04G473110PF13445zf-RING_UBOX2722810.004417.7
TkA04G473110PF14447Prok-RING_43143420.2312.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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