TkA04G455540 | RubberDandelionOmics

Gene overview

TkA04G455540

Reference: TK1151 Chr: Chr04 Coordinates: 114832786-114833850 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

966 bp · TkA04G455540|TK1151|cDNA

GAGGAGCAAGGAAAAAGGAGAAAGCTTCTTTGAATCCACTCAATTTGCCTGTCATTCATTTCTCCACGCATATTATCGTTTTTTTTTTTTCACAAAACACATCTCAAAGAAAAATAAAGAAAAACCAAAAAAGAAAAAGGGGAATTTGGGCGCCATTTTTCCCATTAACAATTTGTAAAAATGACCTCGATGGGCTCAGATAGGTTTAGAAAGGCAATCGGAAAAGTGAAGGATCACACTAGCATTAGCCTCGCCAGAGT...

CDS

Download CDS FASTA

786 bp · TkA04G455540|TK1151|CDS

ATGACCTCGATGGGCTCAGATAGGTTTAGAAAGGCAATCGGAAAAGTGAAGGATCACACTAGCATTAGCCTCGCCAGAGTTAGTAGCAGCACCACCTTACCGGATCTCGAAGTCGCAATCGTCAAGGCCACCCGTCACGAGGAGTACCCGGCGGAAGAACGCCACATACAAGAAATCATAACCCTAACCACCGACTCACAACCCTACGTCGCCTCATGTATCAGCTTGATCTCCGCGCGGCTCGACAAGACCAGAAATTG...

Protein

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262 aa · TkA04G455540|TK1151|PROTEIN

MTSMGSDRFRKAIGKVKDHTSISLARVSSSTTLPDLEVAIVKATRHEEYPAEERHIQEIITLTTDSQPYVASCISLISARLDKTRNWMVALKVLIVIQRLLQDGDPAYEREIFFATRRGTRLLNMFDFRDMSRTNSWDFSAFVRTYSLYLDEYLEYRMQGRQEMHGSYSEEDELKPDPVILISPVNEKSNDNLFSRLQHLIQLLERFLACRPTGSARNHRIVMVALYPIVKQSFNMYYDITDVLSILTDRFKEFEHSDSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G455540`
TK1151 ID	TkA04G455540
OH-1004 ID	LXL04_038685
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 53.689 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G455540

Location Chr04:114832786-114833850 (+)

Description Similar to At1g03050: Putative clathrin assembly protein At1g03050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g03050`	Putative clathrin assembly protein At1g03050.	No verified direct reference in this release
`At4g02650`	Putative clathrin assembly protein At4g02650.	No verified direct reference in this release
`At4g32285`	Probable clathrin assembly protein At4g32285.	No verified direct reference in this release
`At2g25430`	Putative clathrin assembly protein At2g25430.	No verified direct reference in this release
`At1g05020`	Adaptins are components of the adapter complexes which link clathrin to receptors in coated vesicles.	Identification and functional characterization of Arabidopsis AP180, a binding partner of plant alphaC-adaptin.2004 · DOI: 10.1242/jcs.01062

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038685 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006900 vesicle budding from membrane Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0015031 protein transport Biological Process

GO:0048268 clathrin coat assembly Biological Process

GO:0072583 clathrin-dependent endocytosis Biological Process

GO:0072659 protein localization to plasma membrane Biological Process

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005905 clathrin-coated pit Cellular Component

GO:0009504 cell plate Cellular Component

KEGG gene cross-reference

ath:AT1G03050

ath:AT1G05020

ath:AT4G02650

ath:AT4G25940

ath:AT4G32285

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.501

Rank 1 · TkA04G455540 · TK1151

Nucleus0.248

Rank 2 · TkA04G455540 · TK1151

Cell membrane0.246

Rank 3 · TkA04G455540 · TK1151

Golgi apparatus0.077

Rank 4 · TkA04G455540 · TK1151

Lysosome / Vacuole0.066

Rank 5 · TkA04G455540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07651ANTH35-261 aa

PF01417ENTH35-111 aa

PF18740EC042_282172-83 aa

PF18740EC042_2821132-170 aa

PF01417ENTH227-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G455540	`PF07651`	ANTH	35	261	8.4e-61	206.1
TkA04G455540	`PF01417`	ENTH	35	111	1.9e-07	31.8
TkA04G455540	`PF18740`	EC042_2821	72	83	0.18	13.2
TkA04G455540	`PF18740`	EC042_2821	132	170	0.18	13.2
TkA04G455540	`PF01417`	ENTH	227	253	1.9e-07	31.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SA65`	Arabidopsis thaliana	sp\|Q9SA65\|CAP4_ARATH Putative clathrin assembly protein At1g03050	58.800%	Swiss-Prot	High
`Q8GX47`	Arabidopsis thaliana	sp\|Q8GX47\|CAP3_ARATH Putative clathrin assembly protein At4g02650	55.200%	Swiss-Prot	High
`Q8S9J8`	Arabidopsis thaliana	sp\|Q8S9J8\|CAP1_ARATH Probable clathrin assembly protein At4g32285	42.500%	Swiss-Prot	Medium
`Q8LF20`	Arabidopsis thaliana	sp\|Q8LF20\|CAP2_ARATH Putative clathrin assembly protein At2g25430	39.800%	Swiss-Prot	Medium
`Q9ZVN6`	Arabidopsis thaliana	sp\|Q9ZVN6\|AP180_ARATH Clathrin coat assembly protein AP180	38.700%	Swiss-Prot	Medium

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