Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1190 bp · TkA04G440110|TK1151|cDNA
GCATATAAATCTAAGCGCAATTTCTTTTTATTTTGATTTCACTGAAACAAACACAGATCCAGATCGCAACCACCAGTCACAGTTCAAGATCCAGAAGCTCCAAGCTTTCTCCATAGCTTAGTTAAGGCCAATTAAAACCACAACTATGTCTAGAAGACCAACAGGTTTATCTAGGCGATTGGGGGATGGAGCCAGCATTCCATTTATGGGATCATTACACCCAAAATCACGCCCATCACCCTTCTTATCCATTGGGCTTG...
786 bp · TkA04G440110|TK1151|CDS
ATGTCTAGAAGACCAACAGGTTTATCTAGGCGATTGGGGGATGGAGCCAGCATTCCATTTATGGGATCATTACACCCAAAATCACGCCCATCACCCTTCTTATCCATTGGGCTTGTAGTAGTGGGAGCTTTTCTCATAATTGGATATCTTTACAGCGGTTCAGGTGGCAACAGTTATGATAGGGCTGCTTTAAGTAGACTTGAAGGTGGTGGTTCATGTACATCTGAGATATTTCAAGCACTCCCGTATCTAAAAAAAGC...
Protein
Download Protein FASTA261 aa · TkA04G440110|TK1151|PROTEIN
MSRRPTGLSRRLGDGASIPFMGSLHPKSRPSPFLSIGLVVVGAFLIIGYLYSGSGGNSYDRAALSRLEGGGSCTSEIFQALPYLKKAYGDSMHKILHVGPDTCAVVSNLLKEEDTEAWGVEPYDLDDSDASCKSLVRRGTVRVADIKFSLPYRSKSFSLVIVSDALDYLSPKYLNKTLPELARVSSDGFIIFSGYPGQSKFKGAELAKFGRPAKLRSASWWIRFFVQSRIEENEEAVKKFELGAATKYQPACQIFHLKSF...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G440110 |
|---|---|
| TK1151 ID | TkA04G440110 |
| OH-1004 ID | LXL04_038533 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 98.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 94.909Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G440110 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:111015079-111017648 (-) | |||||||||
| Description | Similar to CGR2: Probable pectin methylesterase CGR2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009664 plant-type cell wall organization Biological Process GO:0009832 plant-type cell wall biogenesis Biological Process GO:0009965 leaf morphogenesis Biological Process GO:0010394 homogalacturonan metabolic process Biological Process GO:0015976 carbon utilization Biological Process GO:0032259 methylation Biological Process GO:0045488 pectin metabolic process Biological Process GO:0045489 pectin biosynthetic process Biological Process GO:0048639 positive regulation of developmental growth Biological Process GO:0051512 positive regulation of unidimensional cell growth Biological Process GO:1903942 positive regulation of respiratory gaseous exchange Biological Process GO:1905157 positive regulation of photosynthesis Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT3G49720 ath:AT5G65810 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08294TIM2135-93 aaPF13649Methyltransf_25104-186 aaPF08241Methyltransf_11131-190 aaPF08294TIM21221-234 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G440110 | PF08294 | TIM21 | 35 | 93 | 0.21 | 12.2 |
| TkA04G440110 | PF13649 | Methyltransf_25 | 104 | 186 | 0.003 | 18.9 |
| TkA04G440110 | PF08241 | Methyltransf_11 | 131 | 190 | 0.00055 | 21.2 |
| TkA04G440110 | PF08294 | TIM21 | 221 | 234 | 0.21 | 12.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.