Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA04G440110 |
|---|---|
| Query reference | TK1151 |
| Location | Chr04:111015079-111017648 (-) |
| Description | Similar to CGR2: Probable pectin methylesterase CGR2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_038533 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 23 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g49720 |
Together with CGR3, required for homogalacturonan pectins (HG) methylesterification in the Golgi apparatus prior to integration into cell walls, essential for general growth and development. | |
At5g65810 |
Together with CGR2, required for homogalacturonan pectins (HG) methylesterification in the Golgi apparatus prior to integration into cell walls, essential for general growth and development. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009664 | plant-type cell wall organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009832 | plant-type cell wall biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009965 | leaf morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010394 | homogalacturonan metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.251; coverage=94.182; evalue=4.6e-122; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015976 | carbon utilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032259 | methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045488 | pectin metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045489 | pectin biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048639 | positive regulation of developmental growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051512 | positive regulation of unidimensional cell growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903942 | positive regulation of respiratory gaseous exchange | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905157 | positive regulation of photosynthesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000139 | Golgi membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.251; coverage=94.182; evalue=4.6e-122; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005768 | endosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005797 | Golgi medial cisterna | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005802 | trans-Golgi network | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008168 | methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G49720 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.409; coverage=94.182; evalue=1.25e-123 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G65810 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.251; coverage=94.182; evalue=4.6e-122 | UniProtKB/Swiss-Prot DAT 2026 current_release |