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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G428870
Reference: TK1151 Chr: Chr04 Coordinates: 108242972-108247111 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2415 bp · TkA04G428870|TK1151|cDNA

CAAAGATCATATTATCATCATGACTACAACTCCTCTCCTTCACCACCTCTTCTTCTTCCTCGCCATTCCTCTGTTACTTTCTTCCGTTTCTTCTCTCAACTCCGATGGCACCATTCTCCTATCTTTCAAAAACTCACTTCTCTCTCACCCATCTTCACTCCTTCAAAACTGGAACCATTCTGATCCCACCCCATGTTCATGGTCCGGCGTCACGTGTGCACCTCAATACGGTCATGTCACCAGTTTGCTACTCCCAAGCT...

CDS

Download CDS FASTA

2172 bp · TkA04G428870|TK1151|CDS

ATGACTACAACTCCTCTCCTTCACCACCTCTTCTTCTTCCTCGCCATTCCTCTGTTACTTTCTTCCGTTTCTTCTCTCAACTCCGATGGCACCATTCTCCTATCTTTCAAAAACTCACTTCTCTCTCACCCATCTTCACTCCTTCAAAACTGGAACCATTCTGATCCCACCCCATGTTCATGGTCCGGCGTCACGTGTGCACCTCAATACGGTCATGTCACCAGTTTGCTACTCCCAAGCTCTCACCTTCTGGGTTCCAT...

Protein

Download Protein FASTA

723 aa · TkA04G428870|TK1151|PROTEIN

MTTTPLLHHLFFFLAIPLLLSSVSSLNSDGTILLSFKNSLLSHPSSLLQNWNHSDPTPCSWSGVTCAPQYGHVTSLLLPSSHLLGSIPDDFGRLQHLRALDLSDNSINGTLPISLFNCSELQTLSLSSNFISGELPELISGLRSLRVLNLSHNGFVGKLPESFSFLKNLNEVTLNNNYFSGGVPGGFDSIEVLDLSSNLFNGTLPFDFGGGKLKYLNLSNNKLSGPVYQRFVENIPANAVVDLSFNSLTGQIPQMMSLSN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G428870
TK1151 IDTkA04G428870
OH-1004 IDLXL04_038439
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 71.784 / OH-1004 90.418
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G428870
LocationChr04:108242972-108247111 (-)
DescriptionSimilar to At4g34220: Receptor protein kinase-like protein At4g34220
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34220 Receptor protein kinase-like protein At4g34220. No verified direct reference in this release
At4g37250 Probable LRR receptor-like serine/threonine-protein kinase At4g37250. No verified direct reference in this release
At2g01210 Receptor protein kinase acting as an integrator for intracellular calcium and heterotrimeric G protein signaling with extracellular signals during early zygote development. No verified direct reference in this release
At1g66830 Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830. No verified direct reference in this release
At5g05160 Probable leucine-rich repeat receptor-like protein kinase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038439 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010030 positive regulation of seed germination Biological Process
GO:0010069 zygote asymmetric cytokinesis in embryo sac Biological Process
GO:0010070 zygote asymmetric cell division Biological Process
GO:0042631 cellular response to water deprivation Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0062207 regulation of pattern recognition receptor signaling pathway Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G48480
ath:AT1G66830
ath:AT2G01210
ath:AT4G34220
ath:AT4G37250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.868
Rank 1 · TkA04G428870 · TK1151
Endoplasmic reticulum0.093
Rank 2 · TkA04G428870 · TK1151
Cytoplasm0.064
Rank 3 · TkA04G428870 · TK1151
Nucleus0.051
Rank 4 · TkA04G428870 · TK1151
Lysosome / Vacuole0.024
Rank 5 · TkA04G428870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04478Mid224-42 aa
PF08263LRRNT_226-66 aa
PF23211LRR_LRWD171-131 aa
PF13855LRR_872-129 aa
PF00560LRR_173-94 aa
PF29594LRR_SKP278-152 aa
PF12799LRR_485-107 aa
PF23598LRR_1485-127 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G428870PF04478Mid224420.04814.2
TkA04G428870PF08263LRRNT_226664.8e-1349.8
TkA04G428870PF23211LRR_LRWD1711310.0007919.9
TkA04G428870PF13855LRR_8721296.1e-1555.4
TkA04G428870PF00560LRR_173941.8e-1863.3
TkA04G428870PF29594LRR_SKP2781520.0314.3
TkA04G428870PF12799LRR_4851074.6e-0936.9
TkA04G428870PF23598LRR_14851273.6e-0833.3
TkA04G428870PF23598LRR_14941743.6e-0833.3
TkA04G428870PF13516LRR_6951099.3e-0626.0
TkA04G428870PF00560LRR_1961181.8e-1863.3
TkA04G428870PF12799LRR_4961384.6e-0936.9
TkA04G428870PF24758LRR_At5g56370961520.1512.4
TkA04G428870PF24141LRR_ComC981140.02415.0
TkA04G428870PF24048LRR_NXF1-51051550.06113.7
TkA04G428870PF24141LRR_ComC1101630.02415.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94C77Arabidopsis thalianasp|Q94C77|RPKL_ARATH Receptor protein kinase-like protein At4g3422047.300%Swiss-ProtMedium
C0LGS3Arabidopsis thalianasp|C0LGS3|Y4372_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g3725053.100%Swiss-ProtHigh
Q9ZU46Arabidopsis thalianasp|Q9ZU46|ZAR1_ARATH Receptor protein kinase-like protein ZAR138.300%Swiss-ProtMedium
Q9C9N5Arabidopsis thalianasp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g6683035.700%Swiss-ProtMedium
Q9FHK7Arabidopsis thalianasp|Q9FHK7|Y5516_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g0516033.300%Swiss-ProtLow

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