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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G425280
Reference: TK1151 Chr: Chr04 Coordinates: 107298409-107305292 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2062 bp · TkA04G425280|TK1151|cDNA

CGATAACGAGATATGAATTACAGACAAGCAAGCAGAAAGCAAAGCTTAGCTAACACAACACGACGCCTACTTATCTTCCATTAATGCTCACTTATATATTACCTTTGTACACCAGGCATTCAGTAAAGCGAAAATGTTAGGGTTCTTAGTGAGAAGTGCAAAATCAACCTCACTATCATCTCCATATCGATGGCGTTCATCAATCAGCTTCGGTATGATCACGCCATCAAGCAATCGCGATTTCAGCATCCAATCACCAG...

CDS

Download CDS FASTA

1992 bp · TkA04G425280|TK1151|CDS

ATGATCACGCCATCAAGCAATCGCGATTTCAGCATCCAATCACCAGGACACAATGTCCTCCCCGATGGTATCGACCGGACCTCTGATTCATTTATTCGAAACTCTAAGGAAATGGAATCTGTCATTTCTCAACTTCATTCTCGTATCTATCAGGTGACCCAAGGTGGAGGAGCAGAAGCTATAAAGAGGCATAGAAGTAGAAACAAACTGCTTCCAAGGGAGAGAATCGATCGCTTACTGGATTCTTCTTCTTCCTTTCT...

Protein

Download Protein FASTA

663 aa · TkA04G425280|TK1151|PROTEIN

MITPSSNRDFSIQSPGHNVLPDGIDRTSDSFIRNSKEMESVISQLHSRIYQVTQGGGAEAIKRHRSRNKLLPRERIDRLLDSSSSFLELSQLAGHELYEESLPSGGIITGIGPVHGKLCMFIANDATVKGGTYYPITVKKHLRAQEIASKCRLPCIYLVDSGGAFLPKQAEVFPDKENFGRVFYNQAIMSSEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAAIGEEVSSEDLGGADVHCKISGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G425280
TK1151 IDTkA04G425280
OH-1004 IDLXL04_038401
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.700
Protein coverage (%)TK1151 83.560 / OH-1004 94.863
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G425280
LocationChr04:107298409-107305292 (+)
DescriptionSimilar to MCCB: Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34030 Carboxyltransferase subunit of the 3-methylcrotonyl-CoA carboxylase, an enzyme that catalyzes the conversion of 3-methylcrotonyl-CoA to 3-methylglutaconyl-CoA, a critical step for leucine and isovaleric acid catabolism. No verified direct reference in this release
At2g15570 Thiol-disulfide oxidoreductase required for maintaining symplastic permeability in the meristem. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0430800 Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of chloroplastic enzymes. No verified direct reference in this release
Os12g0188700 Thiol-disulfide oxidoreductase probably involved in the redox regulation of chloroplastic enzymes.
Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants.2008 · DOI: 10.1104/pp.108.123547
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038401 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006552 L-leucine catabolic process Biological Process
GO:0007563 regulation of eclosion Biological Process
GO:0015936 coenzyme A metabolic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:1905202 methylcrotonoyl-CoA carboxylase complex Cellular Component
GO:0004485 methylcrotonoyl-CoA carboxylase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0050897 cobalt ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G34030
cel:CELE_F02A9.10
dme:Dmel_CG3267
mmu:78038
rno:361884
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.649
Rank 1 · TkA04G425280 · TK1151
Nucleus0.206
Rank 2 · TkA04G425280 · TK1151
Mitochondrion0.152
Rank 3 · TkA04G425280 · TK1151
Peroxisome0.110
Rank 4 · TkA04G425280 · TK1151
Cell membrane0.053
Rank 5 · TkA04G425280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03255ACCA35-222 aa
PF01039Carboxyl_trans64-545 aa
PF06833MdcE147-209 aa
PF03255ACCA377-441 aa
PF06833MdcE386-477 aa
PF00085Thioredoxin452-472 aa
PF26422Halo_JAB_MPN531-582 aa
PF00085Thioredoxin557-655 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G425280PF03255ACCA352222.8e-1557.0
TkA04G425280PF01039Carboxyl_trans645451.7e-161538.9
TkA04G425280PF06833MdcE1472092.7e-0524.7
TkA04G425280PF03255ACCA3774412.8e-1557.0
TkA04G425280PF06833MdcE3864772.7e-0524.7
TkA04G425280PF00085Thioredoxin4524721.2e-2383.7
TkA04G425280PF26422Halo_JAB_MPN5315820.3311.7
TkA04G425280PF00085Thioredoxin5576551.2e-2383.7
TkA04G425280PF08534Redoxin5616170.005117.3
TkA04G425280PF13899Thioredoxin_75705930.00218.9
TkA04G425280PF13098Thioredoxin_25726570.0001722.6
TkA04G425280PF14595Thioredoxin_95796500.02615.1
TkA04G425280PF07449HyaE5936430.1113.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LDD8Arabidopsis thalianasp|Q9LDD8|MCCB_ARATH Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial78.100%Swiss-ProtHigh
Q9SEU7Arabidopsis thalianasp|Q9SEU7|TRXM3_ARATH Thioredoxin M3, chloroplastic62.500%Swiss-ProtHigh
Q7XQQ2Oryza sativa subsp. japonicasp|Q7XQQ2|TRXM3_ORYSJ Thioredoxin M3, chloroplastic55.100%Swiss-ProtMedium
Q9ZP20Oryza sativa subsp. japonicasp|Q9ZP20|TRXM5_ORYSJ Thioredoxin M5, chloroplastic51.000%Swiss-ProtMedium

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