TkA04G425100 | RubberDandelionOmics

Gene overview

TkA04G425100

Reference: TK1151 Chr: Chr04 Coordinates: 107244096-107247029 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1734 bp · TkA04G425100|TK1151|cDNA

TTATGAAAGACAAAGATGAATGAATGGAGCACCGAGGTTTTTACCATTTAAAAGGAGCGCAAGACACTTGTCATCTCTTCCGAGCAATCAAAGAAACGTAACGACACGCTGCTCTTCTCCTTCACCCTCTCCCTCTCATCTTTCTCACTCTAAAAGGACATCGAAGCCATAGCGATTCATTTGCATTATTTTTGGGGTTTCAAGATTTAAGAACATGAGTTCGTTTATGAACTTCAGAAACTACGTCGACACATCGCAAC...

CDS

Download CDS FASTA

1215 bp · TkA04G425100|TK1151|CDS

ATGAGTTCGTTTATGAACTTCAGAAACTACGTCGACACATCGCAACCAGAGATCAATGTAATTAAACAAATGGGGCCAAATTCGCCATTGACGCGACAATCTTCAATCTATTCATTAACTTTCGATGAATTACAGAACACATTGGGCGGAGGTGGGAAGGATTTCGGGTCGATGAACATGGATGAGCTATTGAAGAACATCTGGACTGCCGAAGAAACTCAATCAATGGCATCCGCTTCAAATTTCGGAATCGCGAATAA...

Protein

Download Protein FASTA

404 aa · TkA04G425100|TK1151|PROTEIN

MSSFMNFRNYVDTSQPEINVIKQMGPNSPLTRQSSIYSLTFDELQNTLGGGGKDFGSMNMDELLKNIWTAEETQSMASASNFGIANNANIQRQGSLTLPRTLSQKTVDEVWRELQKSNGGGKGGDLIGEINLQSEQREPTLGEMTLEDFLMKAGVATENNQIQTNERSMNPQNVQNGSYFGDASKNAENSSFIFGFQNPNQNHGFQPQITESKNGLNLQPNPNPNPNQKPQTQPQPLFPKLAALDFTAPLNSKSENPMKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G425100`
TK1151 ID	TkA04G425100
OH-1004 ID	LXL04_031687
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	48.000
Protein coverage (%)	TK1151 92.822 / OH-1004 90.299 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G425100

Location Chr04:107244096-107247029 (+)

Description Similar to ABF2: ABSCISIC ACID-INSENSITIVE 5-like protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g19290`	Functions as a transcriptional activator in the ABA-inducible expression of LTI65/RD29B (AC Q04980).	Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions.2000 · DOI: 10.1073/pnas.190309197 Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling.2002 · DOI: 10.1105/tpc.010362 The effect of ABRE BINDING FACTOR 4-mediated FYVE1 on salt stress tolerance in Arabidopsis.2020 · DOI: 10.1016/j.plantsci.2020.110489
`At1g49720`	Binds to the ABA-responsive element (ABRE).	No verified direct reference in this release
`UniProt: Q9M7Q3`	Binds to the ABA-responsive element (ABRE).	No verified direct reference in this release
`At1g45249`	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction.	Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions.2000 · DOI: 10.1073/pnas.190309197 AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis.2005 · DOI: 10.1105/tpc.105.035659 Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis.2006 · DOI: 10.1007/s11103-005-2418-5

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0766700`	Transcriptional activator that mediates abscisic acid (ABA) signaling.	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice.2008 · DOI: 10.1104/pp.108.128199 Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes.2016 · DOI: 10.1104/pp.16.00469 OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.2016 · DOI: 10.1016/j.devcel.2016.06.011

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031687 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0010152 pollen maturation Biological Process

GO:0010255 glucose mediated signaling pathway Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT1G45249

ath:AT1G49720

ath:AT3G19290

ath:AT4G34000

dosa:Os01g0859300

osa:4325061

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.967

Rank 1 · TkA04G425100 · TK1151

Cytoplasm0.104

Rank 2 · TkA04G425100 · TK1151

Cell membrane0.023

Rank 3 · TkA04G425100 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA04G425100 · TK1151

Plastid0.010

Rank 5 · TkA04G425100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03131bZIP_Maf35-50 aa

PF03131bZIP_Maf57-75 aa

PF25322RBD_SIN1321-355 aa

PF07716bZIP_2325-373 aa

PF00170bZIP_1326-377 aa

PF03131bZIP_Maf326-380 aa

PF25322RBD_SIN1345-383 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G425100	`PF03131`	bZIP_Maf	35	50	0.0092	17.2
TkA04G425100	`PF03131`	bZIP_Maf	57	75	0.0092	17.2
TkA04G425100	`PF25322`	RBD_SIN1	321	355	5.8	7.7
TkA04G425100	`PF07716`	bZIP_2	325	373	2e-09	38.0
TkA04G425100	`PF00170`	bZIP_1	326	377	1.7e-12	48.0
TkA04G425100	`PF03131`	bZIP_Maf	326	380	0.0092	17.2
TkA04G425100	`PF25322`	RBD_SIN1	345	383	5.8	7.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M7Q2`	Arabidopsis thaliana	sp\|Q9M7Q2\|AI5L7_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 7	49.100%	Swiss-Prot	Medium
`Q9M7Q5`	Arabidopsis thaliana	sp\|Q9M7Q5\|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4	48.600%	Swiss-Prot	Medium
`Q9M7Q3`	Arabidopsis thaliana	sp\|Q9M7Q3\|AI5L6_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 6	43.200%	Swiss-Prot	Medium
`Q9M7Q4`	Arabidopsis thaliana	sp\|Q9M7Q4\|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5	44.300%	Swiss-Prot	Medium
`Q6Z312`	Oryza sativa subsp. japonica	sp\|Q6Z312\|BZP23_ORYSJ bZIP transcription factor 23	42.300%	Swiss-Prot	Medium

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