LXL04_031687 | RubberDandelionOmics

Gene overview

LXL04_031687

Reference: OH-1004 Chr: Chr07 Coordinates: 9544116-9545807 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1240 bp · LXL04_031687|LXL04_031687|OH1004|cDNA

tttgatatttttgtgTTGAACAGCAAGAGCTTTGATTAGCTTCATACGGACTCCGATTTCGGTGAGAGAAATTTTCGCTATGAACTTCAAAAGCTTCGGAAACCAGACGGCGGAGGTGGGGAACGGGAGACCACCGGGAGGCTTCCATTTGGCAAGACAAGGCTCGATATATTCGTTAACTTTCGATGAGCTACAAAACACCATGGGTAGCATGGGAAGGGATTTCGGGTCTATGAACATGGATGAATTACTAAAAAGCA...

CDS

Download CDS FASTA

1209 bp · LXL04_031687|LXL04_031687|OH1004|CDS

TTGATTAGCTTCATACGGACTCCGATTTCGGTGAGAGAAATTTTCGCTATGAACTTCAAAAGCTTCGGAAACCAGACGGCGGAGGTGGGGAACGGGAGACCACCGGGAGGCTTCCATTTGGCAAGACAAGGCTCGATATATTCGTTAACTTTCGATGAGCTACAAAACACCATGGGTAGCATGGGAAGGGATTTCGGGTCTATGAACATGGATGAATTACTAAAAAGCATTTGGAACGCCGAGGAAGTTCAAACAACCGG...

Protein

Download Protein FASTA

402 aa · LXL04_031687|LXL04_031687|OH1004|PROTEIN

MISFIRTPISVREIFAMNFKSFGNQTAEVGNGRPPGGFHLARQGSIYSLTFDELQNTMGSMGRDFGSMNMDELLKSIWNAEEVQTTGTNTGVQESGGDGGANMNIQRQGSLTLPRTLSQKTVDEVWKDISKEFNGFGQPNLPQRQQTLGEMTLEEFLVKAGVVREEAQSPVKPNDNALFPNLTNPQNNPGFGAVGFQQASNRNNNQIAFQPANLPLNVNGVRSNPQQQLFPKQTNHAYGAPMAIPPSKQLGSPVVRNGVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031687`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031687

Location Chr07:9544116-9545807 (+)

Description Similar to ABF2: ABSCISIC ACID-INSENSITIVE 5-like protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g45249`	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction.	Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions.2000 · DOI: 10.1073/pnas.190309197 AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis.2005 · DOI: 10.1105/tpc.105.035659 Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis.2006 · DOI: 10.1007/s11103-005-2418-5
`At3g19290`	Functions as a transcriptional activator in the ABA-inducible expression of LTI65/RD29B (AC Q04980).	Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions.2000 · DOI: 10.1073/pnas.190309197 Arabidopsis basic leucine zipper proteins that mediate stress-responsive abscisic acid signaling.2002 · DOI: 10.1105/tpc.010362 The effect of ABRE BINDING FACTOR 4-mediated FYVE1 on salt stress tolerance in Arabidopsis.2020 · DOI: 10.1016/j.plantsci.2020.110489
`UniProt: Q9M7Q3`	Binds to the ABA-responsive element (ABRE).	No verified direct reference in this release
`At1g49720`	Binds to the ABA-responsive element (ABRE).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0859300`	May act as a transcription factor with transactivation activity observed in yeast.	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.2008 · DOI: 10.1007/s11103-008-9298-4 Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.2011 · DOI: 10.1016/j.phytochem.2010.10.005 A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.2012 · DOI: 10.1093/jxb/err338

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031687 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0010152 pollen maturation Biological Process

GO:0010255 glucose mediated signaling pathway Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT1G45249

ath:AT1G49720

ath:AT3G19290

ath:AT4G34000

dosa:Os01g0859300

osa:4325061

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.956

Rank 1 · LXL04_031687 · OH-1004

Cytoplasm0.148

Rank 2 · LXL04_031687 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_031687 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_031687 · OH-1004

Mitochondrion0.010

Rank 5 · LXL04_031687 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07716.21bZIP_2324-374 aa

PF00170.27bZIP_1325-374 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031687	`PF07716.21`	bZIP_2	324	374	9.1e-11	42.4
LXL04_031687	`PF00170.27`	bZIP_1	325	374	1.8e-12	47.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M7Q4`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 5	53.641%	Swiss-Prot	strong database homology
`Q9M7Q2`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 7	45.084%	Swiss-Prot	moderate database homology
`Q9M7Q3`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 6	42.737%	Swiss-Prot	moderate database homology
`Q9M7Q5`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 4	46.036%	Swiss-Prot	moderate database homology
`Q8RZ35`	Oryza sativa subsp. japonica	bZIP transcription factor ABI5 homolog	38.329%	Swiss-Prot	moderate database homology

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