TkA04G423650 | RubberDandelionOmics

Gene overview

TkA04G423650

Reference: TK1151 Chr: Chr04 Coordinates: 106800961-106806598 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3358 bp · TkA04G423650|TK1151|cDNA

CAGCAACGTCGGTCGCCACAAGAAATCCCACAAACTTTCGTTTTCATGATCCCAAAATTTTGGATTACGAGCTCGATCATGCCCCCAATCGAATCATTTTCGCGTCAGGCTCATTACGATTCAGATTTATCACAATCTACTATTTCCCCTCCTTTGTTTCATAACGAACGATGTTTTCAATCAAGCATTAGGGTTTAATACCAACGAACGTTATGGAAACGTTAGAGGATCTGATCGAAGAAGCAAAGCTTCGTACTGTA...

CDS

Download CDS FASTA

2937 bp · TkA04G423650|TK1151|CDS

ATGGAAACGTTAGAGGATCTGATCGAAGAAGCAAAGCTTCGTACTGTATGGTGGGGTATCTGCATTTTCGCTGTCACATACCTTTTAACACACACGAGCAAATTAATGTGGATGAATGTTCCTATAGCAATTCTTCTGGTATCAGGCGTTCATATTTTATTAACCCAAGTAGATCTCCGTTGGAAGATCAGGAAATCAAACCAACATTCATATCTAGCACACTTACAGAAAAAACAATTGTCTGTAAATGACTCTCGTCT...

Protein

Download Protein FASTA

978 aa · TkA04G423650|TK1151|PROTEIN

METLEDLIEEAKLRTVWWGICIFAVTYLLTHTSKLMWMNVPIAILLVSGVHILLTQVDLRWKIRKSNQHSYLAHLQKKQLSVNDSRLTTLPPPPKWKRKIDSPVVEAAMDDFTNKILQEFVVDLWYSSITPDKEAPQLIHSIIMDIFAEVSMRVKDINLVDMLTRDVVDLVGDHIELFRKNQASIGREVMVTLSSEERDERLKHHLMASKELHPALISPESEYKYLKRIMGALLTAVLRPREAQCPIVRCIMRELLTCLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G423650`
TK1151 ID	TkA04G423650
OH-1004 ID	LXL04_038353
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.900
Protein coverage (%)	TK1151 98.466 / OH-1004 99.220 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA04G423650`
Location	Chr04:106800961-106806598 (-)
Description	Similar to Sgk3: Serine/threonine-protein kinase Sgk3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_038353` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0001881 receptor recycling Biological Process GO:0006622 protein targeting to lysosome Biological Process GO:0008333 endosome to lysosome transport Biological Process GO:0035556 intracellular signal transduction Biological Process GO:0045022 early endosome to late endosome transport Biological Process GO:0005764 lysosome Cellular Component GO:0005769 early endosome Cellular Component GO:0005770 late endosome Cellular Component GO:0010008 endosome membrane Cellular Component GO:0031410 cytoplasmic vesicle Cellular Component GO:0031901 early endosome membrane Cellular Component GO:0031902 late endosome membrane Cellular Component
KEGG gene cross-reference	hsa:64089 mmu:170755 mmu:74718 pon:100173483 rno:64088 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.325

Rank 1 · TkA04G423650 · TK1151

Golgi apparatus0.290

Rank 2 · TkA04G423650 · TK1151

Cytoplasm0.216

Rank 3 · TkA04G423650 · TK1151

Cell membrane0.207

Rank 4 · TkA04G423650 · TK1151

Nucleus0.132

Rank 5 · TkA04G423650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00787PX77-118 aa

PF02194PXA102-278 aa

PF25574TPR_IMB1108-183 aa

PF29094MRX12_middle141-208 aa

PF00787PX521-597 aa

PF08628Nexin_C792-928 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G423650	`PF00787`	PX	77	118	1.9e-14	54.7
TkA04G423650	`PF02194`	PXA	102	278	1.4e-40	140.2
TkA04G423650	`PF25574`	TPR_IMB1	108	183	0.036	13.5
TkA04G423650	`PF29094`	MRX12_middle	141	208	0.18	12.5
TkA04G423650	`PF00787`	PX	521	597	1.9e-14	54.7
TkA04G423650	`PF08628`	Nexin_C	792	928	1.6e-26	93.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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