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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G412260
Reference: TK1151 Chr: Chr04 Coordinates: 103828378-103832992 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3746 bp · TkA04G412260|TK1151|cDNA

GTAATATTAGGTATATTGATAAATGATGTAATATATAGCCATATATACATAAAATATAATATGATTTAGACAATAATAGGTTAAATTCACCAAATCAAATATATTTTTGGACGGATGCTGATCGCCATACACACGGCCATCTGTATGCATATGTAGAGAGAGAAAAATTGTTGGAGTGATTGATGAGTGAGAGAGAGTAGCAGCAGAGATTTTGAGCTTAGCTACAGTCAACGTGCCCCACCGTACCGGATCTTTGACGA...

CDS

Download CDS FASTA

2607 bp · TkA04G412260|TK1151|CDS

ATGGGGAGTAATTTTGTTGTATTATTGGTGTTGTCGTTGTTGTTACACAGTACATTTGAACAACAACAACTACCACCACCACAAGTTCCGTCCAGATTTAGGGCAGAACGGGCAGCTCTGCTTCAACTTAGATCATCATTAGGGTTAAGATCAAAACAATGGCCGCTAAAGTCCATTCCGTGCTCCAATTGGACCGGAATCTCATGTCAGAACGGCAGTGTCACCGGAATCAACATTTCAGGGTTTAAGCGAACTCGAGC...

Protein

Download Protein FASTA

868 aa · TkA04G412260|TK1151|PROTEIN

MGSNFVVLLVLSLLLHSTFEQQQLPPPQVPSRFRAERAALLQLRSSLGLRSKQWPLKSIPCSNWTGISCQNGSVTGINISGFKRTRAGRRNPRFAVESLANLTNLASFNASRFTLPGSIPNELGFQLQALQVLDLRFCQISGAIPSTLGNLSNLHELYLSDNSLTGTIPSTLGQLPNLSVLDLSRNSLTGLIPSSFGSLLNLSSLDMSLNYLSGIIPESFGNLPNLSFLNLSGNSLSSSLPTQLFNTTTLTVLDLSSNTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G412260
TK1151 IDTkA04G412260
OH-1004 IDLXL04_038268
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 99.885 / OH-1004 99.770
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G412260
LocationChr04:103828378-103832992 (+)
DescriptionSimilar to At2g16250: Probable LRR receptor-like serine/threonine-protein kinase At2g16250
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g16250 Probable LRR receptor-like serine/threonine-protein kinase At2g16250. No verified direct reference in this release
At3g24550 Proline-rich receptor-like protein kinase PERK1. No verified direct reference in this release
At4g32710 Proline-rich receptor-like protein kinase PERK14. No verified direct reference in this release
At1g20650 May be involved in plant defense signaling. No verified direct reference in this release
At1g24030 May be involved in plant defense signaling. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038268 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001558 regulation of cell growth Biological Process
GO:0010286 heat acclimation Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0016020 membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0033612 receptor serine/threonine kinase binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT2G16250
dosa:Os02g0777400
dosa:Os06g0203800
osa:4340427
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.855
Rank 1 · TkA04G412260 · TK1151
Endoplasmic reticulum0.076
Rank 2 · TkA04G412260 · TK1151
Cytoplasm0.068
Rank 3 · TkA04G412260 · TK1151
Nucleus0.051
Rank 4 · TkA04G412260 · TK1151
Lysosome / Vacuole0.029
Rank 5 · TkA04G412260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_236-69 aa
PF12799LRR_497-113 aa
PF29594LRR_SKP2114-303 aa
PF23598LRR_14117-209 aa
PF24758LRR_At5g56370117-178 aa
PF25013LRR_Zer-1126-189 aa
PF29252LRR_NLRC4126-260 aa
PF13855LRR_8129-188 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G412260PF08263LRRNT_236693.2e-0524.8
TkA04G412260PF12799LRR_4971132.3e-1557.0
TkA04G412260PF29594LRR_SKP21143030.410.6
TkA04G412260PF23598LRR_141172091.2e-1351.3
TkA04G412260PF24758LRR_At5g563701171780.002718.1
TkA04G412260PF25013LRR_Zer-11261890.0116.7
TkA04G412260PF29252LRR_NLRC41262601.19.2
TkA04G412260PF13855LRR_81291881.9e-2073.1
TkA04G412260PF12799LRR_41291642.3e-1557.0
TkA04G412260PF00560LRR_11301511.8e-2275.3
TkA04G412260PF23211LRR_LRWD11441898.16.8
TkA04G412260PF23952LRR_EndoS1482104.48.3
TkA04G412260PF24048LRR_NXF1-51501881.39.4
TkA04G412260PF00560LRR_11531751.8e-2275.3
TkA04G412260PF12799LRR_41531912.3e-1557.0
TkA04G412260PF13855LRR_81762361.9e-2073.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGK4Arabidopsis thalianasp|C0LGK4|Y2165_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g1625059.400%Swiss-ProtHigh
Q9LV48Arabidopsis thalianasp|Q9LV48|PERK1_ARATH Proline-rich receptor-like protein kinase PERK133.100%Swiss-ProtLow
O65530Arabidopsis thalianasp|O65530|PEK14_ARATH Proline-rich receptor-like protein kinase PERK1433.300%Swiss-ProtLow
Q9LDZ5Arabidopsis thalianasp|Q9LDZ5|PBL21_ARATH Probable serine/threonine-protein kinase PBL2133.100%Swiss-ProtLow
Q84M95Arabidopsis thalianasp|Q84M95|PBL28_ARATH Probable serine/threonine-protein kinase PBL2831.500%Swiss-ProtLow

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